View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17571_low_3 (Length: 474)
Name: NF17571_low_3
Description: NF17571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17571_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 11 - 459
Target Start/End: Complemental strand, 28651296 - 28650848
Alignment:
| Q |
11 |
agaaaatggagtaacaaaagttccacgcatgttctatcacgaacaatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccct |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28651296 |
agaaaatggagtaacaaaagttccacgcatgttctattgtgaacaatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccct |
28651197 |
T |
|
| Q |
111 |
acaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcaagtgagaaatggggattctttcaagtaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28651196 |
acaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcatgtgagaaatggggattctttcaagtaa |
28651097 |
T |
|
| Q |
211 |
taaatcatggaattccagttcatgttttggatgagatgatcaaaggaacttgtagatttcatcaacaggatcctaaggtgaggaaagagtattacacccg |
310 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28651096 |
taaatcatggaattccagttcatgttttgcatgagatgatcaaaggaacttgtagatttcatcaacaggatcctaaggtgaggaaagagtattacacccg |
28650997 |
T |
|
| Q |
311 |
tgatctcactaaaaaagttgtttatctttccaattttactctttccgaagatcgatctgctgagtggagggacacacttgcatttttctgggcacctcat |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28650996 |
tgatctcactaaaaaagttgtttatctttccaattttactctttccgaagatcaatctgctgagtggagggacacacttgcatttttctgggcacctcat |
28650897 |
T |
|
| Q |
411 |
cctcccaatgttgatgaactaccaccagtttgcaggtttgcatgatagt |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28650896 |
cctcccaatgttgatgaactaccaccagtttgcaggtttgcataatagt |
28650848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 11 - 454
Target Start/End: Complemental strand, 28642435 - 28641992
Alignment:
| Q |
11 |
agaaaatggagtaacaaaagttccacgcatgttctatcacgaacaatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccct |
110 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||| |||||| ||| | ||| | ||||| |||| ||||||| ||||||||| |
|
|
| T |
28642435 |
agaaaatggagtaacaaaagttccacacatgttctattgtgaacaatctagtatcaatgatgtttcagtgaatgaatcaaattcaaagctaagtatccct |
28642336 |
T |
|
| Q |
111 |
acaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcaagtgagaaatggggattctttcaagtaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28642335 |
acaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcatgtgagaaatggggattctttcaagtaa |
28642236 |
T |
|
| Q |
211 |
taaatcatggaattccagttcatgttttggatgagatgatcaaaggaacttgtagatttcatcaacaggatcctaaggtgaggaaagagtattacacccg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28642235 |
taaatcatggaattccagttcatgttttggatgagatgatcaaaggaacttgtagatttcatcaacaggatcctaaggtgaggaaagagtattacacccg |
28642136 |
T |
|
| Q |
311 |
tgatctcactaaaaaagttgtttatctttccaattttactctttccgaagatcgatctgctgagtggagggacacacttgcatttttctgggcacctcat |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28642135 |
tgatctcactaaaaaagttgtttatctttccaattttactctttccgaagatcaatctgctgagtggagggacacacttgcatttttctgggcacctcac |
28642036 |
T |
|
| Q |
411 |
cctcccaatgttgatgaactaccaccagtttgcaggtttgcatg |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28642035 |
cctcccaatgttgatgaactaccaccagtttgcaggtttgcatg |
28641992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 11 - 445
Target Start/End: Complemental strand, 28671018 - 28670584
Alignment:
| Q |
11 |
agaaaatggagtaacaaaagttccacgcatgttctatcacgaacaatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccct |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||| ||| | ||||| |||| ||||||||||| ||||| |
|
|
| T |
28671018 |
agaaaatggagtaacaaaagttccacgcatgttctattgtgaacaatctaatatcaatcatggttcagtaaatgaatcaaattcaaagcttagtgtccct |
28670919 |
T |
|
| Q |
111 |
acaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcaagtgagaaatggggattctttcaagtaa |
210 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||| || || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28670918 |
acaattgacttaacaggaatccatgatgatcctgttttgagagatgaagttgtaagaaaagttcgaaatgcaagtgagaaatggggattctttcaagtaa |
28670819 |
T |
|
| Q |
211 |
taaatcatggaattccagttcatgttttggatgagatgatcaaaggaacttgtagatttcatcaacaggatcctaaggtgaggaaagagtattacacccg |
310 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||| ||||| ||| | ||||||||||| ||||| |||||||| |
|
|
| T |
28670818 |
taaatcatggaattccaacacagattttggatgagatgatcaatggaacttgtagatttcaccaacaagatgccaaggtgaggaaggagtactacacccg |
28670719 |
T |
|
| Q |
311 |
tgatctcactaaaaaagttgtttatctttccaattttactctttccgaagatcgatctgctgagtggagggacacacttgcatttttctgggcacctcat |
410 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||| | | ||| | ||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
28670718 |
tgatcttaccaaaaaagttgtttatctttccaattttactctctacctagaccaatctgctgattggagggacacacttgcatttttctgggcacccgat |
28670619 |
T |
|
| Q |
411 |
cctcccaatgttgatgaactaccaccagtttgcag |
445 |
Q |
| |
|
||||| || | |||||||||||||| |||||||| |
|
|
| T |
28670618 |
cctcctaaagccgatgaactaccaccggtttgcag |
28670584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 451
Target Start/End: Complemental strand, 28675162 - 28674722
Alignment:
| Q |
11 |
agaaaatggagtaacaaaagttccacgcatgttctatcacgaacaatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccct |
110 |
Q |
| |
|
||||||||| || |||||||||||||| |||||| || ||||||||| ||||||| || || |||||||| |||| ||||||||| |||||| |
|
|
| T |
28675162 |
agaaaatggtgtcacaaaagttccacgtatgttccattgtgaacaatctaatatcaatgatctctcaatcagtgaatcaaatttaaagcttagcatccct |
28675063 |
T |
|
| Q |
111 |
acaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcaagtgagaaatggggattctttcaagtaa |
210 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||| | |
|
|
| T |
28675062 |
acaattgacttaacaggaatccacgatgatcctcttttgagagatgaagttgtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtga |
28674963 |
T |
|
| Q |
211 |
taaatcatggaattccagttcatgttttggatgagatgatcaaaggaacttgtagatttcatcaacaggatcctaaggtgaggaaagagtattacacccg |
310 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||| | |||| |||||| ||||| |||||||| |
|
|
| T |
28674962 |
taaatcatggaattccaacacatattttggatgagatgatcaaaggaacttgtagatttcaccaacaagatgccaaggcgaggaaggagtactacacccg |
28674863 |
T |
|
| Q |
311 |
tgatctcactaaaaaagttgtttatctttccaattttactctttccgaagatcgatctgctgagtggagggacacacttgcatttttctgggcacctcat |
410 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||| | |||| | ||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28674862 |
tgatctcaccaaaaaagttgtttatctctccaattttactctttaccaagaccaatctgctgattggagggacacacttgcatttttctgggaacctcat |
28674763 |
T |
|
| Q |
411 |
cctcccaatgttgatgaactaccaccagtttgcaggtttgc |
451 |
Q |
| |
|
|| || || | ||| ||||||||| ||||||||||||||| |
|
|
| T |
28674762 |
cccccaaaagctgaagaactaccaaaagtttgcaggtttgc |
28674722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 100 - 315
Target Start/End: Complemental strand, 28691549 - 28691334
Alignment:
| Q |
100 |
ttagtatccctacaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcaagtgagaaatggggatt |
199 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||| || |||||||||||||| ||||||| || ||||||||||| ||||||| |||||||| |
|
|
| T |
28691549 |
ttagtatccctacaattgacctaacaggaatccatgatgatcttgttttgagagatgaagctgtgagaaaagttgaaaatgcatgtgagaagtggggatt |
28691450 |
T |
|
| Q |
200 |
ctttcaagtaataaatcatggaattccagttcatgttttggatgagatgatcaaaggaacttgtagatttcatcaacaggatcctaaggtgaggaaagag |
299 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||| ||||||||| |
|
|
| T |
28691449 |
ctttcaagtaataaatcatggaatttcagctcatgttttggatgagatgatcaaaggaacttgtagatttcatcaacaagatgttatggtaaggaaagag |
28691350 |
T |
|
| Q |
300 |
tattacacccgtgatc |
315 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
28691349 |
tattacacacgtgatc |
28691334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 89 - 354
Target Start/End: Complemental strand, 28696445 - 28696180
Alignment:
| Q |
89 |
aaatccaaagcttagtatccctacaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcaagtgag |
188 |
Q |
| |
|
|||| ||||||| |||||||| |||||||| ||| |||||||||| |||||| || ||||| |||||||||||||||| || || |||||||||||||| |
|
|
| T |
28696445 |
aaattcaaagctaagtatcccaccaattgacctaacaggaatccataatgatcttgttttgaaagatgaagttgtgagaaaagttcaaaatgcaagtgag |
28696346 |
T |
|
| Q |
189 |
aaatggggattctttcaagtaataaatcatggaattccagttcatgttttggatgagatgatcaaaggaacttgtagatttcatcaacaggatcctaagg |
288 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||| | |||| |
|
|
| T |
28696345 |
aattggggattctttcaagtaataaatcatggaattccaacacaaattttggatgagatgatcaaaggaacttgtagatttcatcaacaagatgccaagg |
28696246 |
T |
|
| Q |
289 |
tgaggaaagagtattacacccgtgatctcactaaaaaagttgtttatctttccaattttactcttt |
354 |
Q |
| |
|
|||| ||||||||||| || | |||| || || |||||||||||| |||| |||| || ||||| |
|
|
| T |
28696245 |
tgagaaaagagtattatacatgcgatcccaacaagaaagttgtttatgtttctaattatagtcttt |
28696180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 201 - 306
Target Start/End: Complemental strand, 28717651 - 28717546
Alignment:
| Q |
201 |
tttcaagtaataaatcatggaattccagttcatgttttggatgagatgatcaaaggaacttgtagatttcatcaacaggatcctaaggtgaggaaagagt |
300 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||||| |
|
|
| T |
28717651 |
tttcaagtaataaatcatggaatttcaactcatgttttggatgagatgatcaaaggaacttgtagatttcatcaacaagatgttagggtaaggaaagagt |
28717552 |
T |
|
| Q |
301 |
attaca |
306 |
Q |
| |
|
|||||| |
|
|
| T |
28717551 |
attaca |
28717546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 28741621 - 28741514
Alignment:
| Q |
83 |
tgaattaaatccaaagcttagtatccctacaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgca |
182 |
Q |
| |
|
||||| |||| ||||| ||||||||| || |||||| ||| ||||||||||||||||| || |||||||||| |||||||||| || || ||||| || |
|
|
| T |
28741621 |
tgaatgaaattcaaagattagtatccgtagaattgatttaccaggaatccatgatgatcttgttttgagagatacagttgtgagaaaagttcaaaattca |
28741522 |
T |
|
| Q |
183 |
agtgagaa |
190 |
Q |
| |
|
||||||| |
|
|
| T |
28741521 |
tgtgagaa |
28741514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 144
Target Start/End: Complemental strand, 28733457 - 28733368
Alignment:
| Q |
55 |
aatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccctacaattgacttaaaaggaatccatgatgatcctg |
144 |
Q |
| |
|
||||| |||||||| ||| | ||| || ||||| |||| ||||| |||||||||||| |||||| ||| |||||||||||||||||||| |
|
|
| T |
28733457 |
aatctaatatcaacgatgtttcagtcaatgaataaaattcaaagattagtatccctagaattgatttaccaggaatccatgatgatcctg |
28733368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 187 - 277
Target Start/End: Original strand, 41238469 - 41238559
Alignment:
| Q |
187 |
agaaatggggattctttcaagtaataaatcatggaattccagttcatgttttggatgagatgatcaaaggaacttgtagatttcatcaaca |
277 |
Q |
| |
|
|||| |||||||| || ||||| || |||||||| |||||| ||||||||||||||||||||||||| |||| ||||||||||||| |||| |
|
|
| T |
41238469 |
agaactggggatttttccaagtgatcaatcatggtattccacttcatgttttggatgagatgatcaatggaatttgtagatttcatgaaca |
41238559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 33769169 - 33769111
Alignment:
| Q |
192 |
tggggattctttcaagtaataaatcatggaattccagttcatgttttggatgagatgat |
250 |
Q |
| |
|
|||||||| |||||||| || |||||||| ||||| ||| |||||||||||||||||| |
|
|
| T |
33769169 |
tggggattttttcaagtgattaatcatggtattccggttattgttttggatgagatgat |
33769111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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