View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17571_low_4 (Length: 393)
Name: NF17571_low_4
Description: NF17571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17571_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 143 - 352
Target Start/End: Original strand, 2155996 - 2156199
Alignment:
| Q |
143 |
atgttggcatatgaagaaataacaatagtcattaaaaacgcacacacaataaatagatgagtagaggtttgagttccgatcaagacattcgacctaataa |
242 |
Q |
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| T |
2155996 |
atgttggcatatgaagaaataacaatagtcattaaaaacgcacacagaataaatggatgagtagaggtttgagttccgatcaagacattcgacctaataa |
2156095 |
T |
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| Q |
243 |
tttcaacatttttatcggttgagttaccactttatgcaacttcaattaatatgaaatacttttattggcacattcaataagattttatcatttagatatt |
342 |
Q |
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| T |
2156096 |
tttcaacatttttatcagttgagttacca------gcaacttcaattaatatcaaataattttattagcatattcaataagattttatcatttagatatt |
2156189 |
T |
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| Q |
343 |
tgtgtaaata |
352 |
Q |
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| T |
2156190 |
tgtgtaaata |
2156199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 2155867 - 2155934
Alignment:
| Q |
14 |
cagagaaaaaagacatgtacttatggagttttcttgcttacgtcggattgatgtataattgcatcatc |
81 |
Q |
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| T |
2155867 |
cagaaaaaaaagacatgtacttatggagttttcttgcttacgtcggattgatgtataattgcatcatc |
2155934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 393
Target Start/End: Original strand, 2156223 - 2156256
Alignment:
| Q |
360 |
ggtaacaaaagggaattttaaaaagttaatatga |
393 |
Q |
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| T |
2156223 |
ggtaacaaaagggaattttaaaaagttaatatga |
2156256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 264
Target Start/End: Complemental strand, 38157220 - 38157174
Alignment:
| Q |
218 |
ccgatcaagacattcgacctaataatttcaacatttttatcggttga |
264 |
Q |
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| T |
38157220 |
ccgatcacaacattcgatctaacaatttcaacatttttatcggttga |
38157174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 39809952 - 39809991
Alignment:
| Q |
221 |
atcaagacattcgacctaataatttcaacatttttatcgg |
260 |
Q |
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| T |
39809952 |
atcaaaacattctacctaataatttcaacatttttatcgg |
39809991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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