View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17571_low_5 (Length: 378)
Name: NF17571_low_5
Description: NF17571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17571_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 51767385 - 51767745
Alignment:
| Q |
1 |
acggacactttagattgaaggcatgtttagagttggatacatattgttgttcgacacaagcatgacaccgatatatgtggttctattcgatcatttttat |
100 |
Q |
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| T |
51767385 |
acggacactttagattgaaggcatgtttagagttggatacatattgttgttcgacacaagcatgacaccgatatatgtggttctattcgatcatttttat |
51767484 |
T |
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| Q |
101 |
tttgttaaattattaggtattgtatctggtgtttgtgtaaggtctttgatgccgactcttggcacttgccaaatcattaccacatcatccccatgccccc |
200 |
Q |
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| T |
51767485 |
tttgttaaattattaggtattgtatctggtgtttgtgtaaggtctttgatgccgactcttggcacttgccaaatcattaccacatcatccccatgccccc |
51767584 |
T |
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| Q |
201 |
gcatgttgtgataatttgaaactttaaatgaatggtcaaattttctacaccatattttcttttatttgttgcatattgcatattcacatgtcagtggtgt |
300 |
Q |
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| T |
51767585 |
gcatgttgtgataatttgaaactttaaatgaatggtcaaattttctacaccatattttcttttatttgttgcatattgcatattcacatgtcagtggtgt |
51767684 |
T |
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| Q |
301 |
atgttgcctaccaaaagtttaagaagttatggaatctcagatatcagttggtcaaacatgg |
361 |
Q |
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| T |
51767685 |
atgttgcctaccaaaagtttaagaagttatggaatctcagatatcagttggtcaaacatgg |
51767745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 35 - 162
Target Start/End: Original strand, 51755680 - 51755810
Alignment:
| Q |
35 |
ggatacatattgttgttcgacacaagcatgacaccga------tatatgtggttctattcgatcatttttattttgttaaattatta--ggtattgtatc |
126 |
Q |
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| T |
51755680 |
ggatacatactgttgttgaacacaagcaagacaccgaccgatatatatgtggttctattcaatcatttttattttctt-aattattaccggtattgta-- |
51755776 |
T |
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| Q |
127 |
tggtgtttgtgtaaggtctttgatgccgactcttgg |
162 |
Q |
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| T |
51755777 |
--gtgtttgtgcaagtgcttcgatgccgactcttgg |
51755810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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