View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17571_low_6 (Length: 320)
Name: NF17571_low_6
Description: NF17571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17571_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 2156521 - 2156228
Alignment:
| Q |
18 |
aatcaaactttaaaacttttttcagaggaaatcaaactttacaacttaattaattggttctaaaaatattacatttattcgtcaatttcttttacagtta |
117 |
Q |
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| T |
2156521 |
aatcaaactttaaaacttttttcagaggaaatcaaactttacaacttaat-aattggttctaaaaatattacatttattcgtcaatttcttttacagtta |
2156423 |
T |
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| Q |
118 |
agccaacatcttatagtgaaagttgaatatgtcacccatgacgtcaaactttcattttctannnnnnnnactcccacgggttttctctagttagaaagaa |
217 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2156422 |
agccaacatcttatcgtgaaagttgaatatgtcacccatgacgtcaaactttcattttctattttttttactcccacgggttttctctagttagaaagaa |
2156323 |
T |
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| Q |
218 |
gaataattagat-aaaacaactcgcaatggacaatcaatca-nnnnnnnaccatttagacatattatcatattaactttttaaaattcccctttg |
310 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2156322 |
gaataattagataaaaacaactcgcaatggataatcaatcattttttttaccatttagacatattatcatattaactttttaaaattcccttttg |
2156228 |
T |
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