View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17571_low_7 (Length: 312)
Name: NF17571_low_7
Description: NF17571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17571_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 51 - 307
Target Start/End: Complemental strand, 42898992 - 42898719
Alignment:
| Q |
51 |
ttgaggaattacggttcttgaactctcctcagctaatgcatcacagaaggctctgtgagttatgaaactgtccctcctgaaaatcatataatatataaac |
150 |
Q |
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| T |
42898992 |
ttgaggaattacggttcttgaactctcctcagctaatgcatcacagaaggctctgtgagttatgaaactgtccctcctgaaaatcatataatatataaac |
42898893 |
T |
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| Q |
151 |
aaaca----aacacaaatactgttactaaaatgctataacagtcaagaaatattcactgtcactcattctctc-------------ttttttagtctcac |
233 |
Q |
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| T |
42898892 |
aaacaaacaaacacaaatactgttactaaaatgctataacagtcaagaaatattcactgtcactcattctctctttttcagtcattttttttagtctcac |
42898793 |
T |
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| Q |
234 |
tctccttagacttgagagtaccaagtgcatgttgggataaatgtaaattttccggtgttagcgtgattttgttg |
307 |
Q |
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| T |
42898792 |
tctccttagacttgagagtactaagtgcatgttgggataaatgtaaattttccggtgttagcgtgattttgttg |
42898719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 50786101 - 50786145
Alignment:
| Q |
85 |
aatgcatcacagaaggctctgtgagttatgaaactgtccctcctg |
129 |
Q |
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| T |
50786101 |
aatgcatcacagaaggctctgtgagttatgaaactgtctctcctg |
50786145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Complemental strand, 4160929 - 4160895
Alignment:
| Q |
91 |
tcacagaaggctctgtgagttatgaaactgtccct |
125 |
Q |
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| T |
4160929 |
tcacagaaggctctgtgagtgatgaaactgtccct |
4160895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 5787997 - 5788056
Alignment:
| Q |
66 |
tcttgaactctcctcagctaatgcatcacagaaggctctgtgagttatgaaactgtccct |
125 |
Q |
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| T |
5787997 |
tcttgcactctcttctgctaatgcatcacaaaatgctctatgtgttatgaaactgtccct |
5788056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 30517352 - 30517399
Alignment:
| Q |
82 |
gctaatgcatcacagaaggctctgtgagttatgaaactgtccctcctg |
129 |
Q |
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| T |
30517352 |
gctaaggcatcacaaaaggctctgtgagttatgaagctgtctctcctg |
30517399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 44150153 - 44150203
Alignment:
| Q |
79 |
tcagctaatgcatcacagaaggctctgtgagttatgaaactgtccctcctg |
129 |
Q |
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| T |
44150153 |
tcagttaatgcatcacagaatgctctgtgggttataaaactgtctctcctg |
44150203 |
T |
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