View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17571_low_8 (Length: 256)

Name: NF17571_low_8
Description: NF17571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17571_low_8
NF17571_low_8
[»] chr5 (3 HSPs)
chr5 (1-238)||(1672715-1672961)
chr5 (1-153)||(21124670-21124822)
chr5 (97-209)||(4081435-4081545)
[»] chr8 (3 HSPs)
chr8 (3-210)||(1776146-1776353)
chr8 (3-209)||(1782573-1782779)
chr8 (91-184)||(1800378-1800471)
[»] chr1 (5 HSPs)
chr1 (73-209)||(19790003-19790138)
chr1 (97-136)||(41324592-41324631)
chr1 (97-136)||(47249691-47249730)
chr1 (156-209)||(47249727-47249780)
chr1 (156-210)||(41324541-41324595)
[»] chr3 (1 HSPs)
chr3 (78-184)||(25729996-25730102)
[»] chr2 (2 HSPs)
chr2 (8-106)||(32315559-32315657)
chr2 (97-153)||(4845159-4845215)
[»] chr6 (1 HSPs)
chr6 (156-209)||(20905184-20905237)


Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 1672961 - 1672715
Alignment:
Q  1 gtgtaccagaagtcttcgttatttgcaaaggagacattttcattagagaagatatgcaattatgaataattaagagaactgatccatgtattgagctgaa 100  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1672961 gtgtaccaaaagccttcgttatttgcaaaggagacattttcattagagaagatatgcaattatggataattaagagaactgatccatgtattgagctgaa 1672862  T
Q  101 tgtgataaaggattcagatcaaatggtcatgttctccaaaccaaaaaagctcatctctcacatactaaagattgctcacaaatattagttatactttcgt 200  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  1672861 tgtgataatggattcggatcaaatggtcatgttctccaaaccaaaaaagctcacctctcacatactaaagattgctcacaaatattagttatgctttcgt 1672762  T
Q  201 tg---------gttttttgattaatagaataattaacatactagctg 238  Q
    ||         ||||||||||||||||||||||||||||||||||||    
T  1672761 tggtttcgttggttttttgattaatagaataattaacatactagctg 1672715  T

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Target: chr5; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 21124670 - 21124822
Alignment:
Q  1 gtgtaccagaagtcttcgttatttgcaaaggagacattttcattagagaagatatgcaattatgaataattaagagaactgatccatgtattgagctgaa 100  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| || ||||||||||||| ||||    
T  21124670 gtgtaccaaaagtctttgttatttgcaaaggagacattttcattagagaagatatgcaattatggataattaacagaattggtccatgtattgaggtgaa 21124769  T
Q  101 tgtgataaaggattcagatcaaatggtcatgttctccaaaccaaaaaagctca 153  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21124770 tgtgataaaggattcagataaaatggtcatgttctccaaaccaaaaaagctca 21124822  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 209
Target Start/End: Original strand, 4081435 - 4081545
Alignment:
Q  97 tgaatgtgataaaggattcagatcaaatggtcatgttctccaaaccaaaaaagctcatctctcacatactaaagattgctcacaaatattagttatactt 196  Q
    |||||||||||| |||||||||||| |||| ||||||||| |||| |||||||||||   |||||||||||||||||| ||||||||||||| ||  |||    
T  4081435 tgaatgtgataatggattcagatcacatggccatgttctctaaactaaaaaagctca--cctcacatactaaagattggtcacaaatattagatacgctt 4081532  T
Q  197 tcgttggtttttt 209  Q
    || ||||||||||    
T  4081533 tcattggtttttt 4081545  T

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Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 3 - 210
Target Start/End: Complemental strand, 1776353 - 1776146
Alignment:
Q  3 gtaccagaagtcttcgttatttgcaaaggagacattttcattagagaagatatgcaattatgaataattaagagaactgatccatgtattgagctgaatg 102  Q
    |||||| |||||||| |||| |  ||||||||||||||||||||||| ||| |||||||||| |||||| ||||||||| ||||| | ||||  |||| |    
T  1776353 gtaccaaaagtcttcattatctctaaaggagacattttcattagagaggatctgcaattatggataattgagagaactggtccatatgttgaagtgaaag 1776254  T
Q  103 tgataaaggattcagatcaaatggtcatgttctccaaaccaaaaaagctcatctctcacatactaaagattgctcacaaatattagttatactttcgttg 202  Q
    ||||||||||||||||||| ||||| |||||||||||||| |||||||||| |||||| || |||| || |||||||||||||||| ||| ||||  |||    
T  1776253 tgataaaggattcagatcacatggttatgttctccaaacctaaaaagctcacctctcatattctaaggagtgctcacaaatattagatatgcttttattg 1776154  T
Q  203 gttttttg 210  Q
    ||||||||    
T  1776153 gttttttg 1776146  T

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Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 1782779 - 1782573
Alignment:
Q  3 gtaccagaagtcttcgttatttgcaaaggagacattttcattagagaagatatgcaattatgaataattaagagaactgatccatgtattgagctgaatg 102  Q
    |||||| |||||||| ||||  |||||||||||| | |||| | ||| |||||||||||||| |||||| ||||||||| ||||| | ||||  |||| |    
T  1782779 gtaccaaaagtcttcattatcagcaaaggagacaatatcatcaaagaggatatgcaattatggataattgagagaactggtccatatgttgaagtgaaag 1782680  T
Q  103 tgataaaggattcagatcaaatggtcatgttctccaaaccaaaaaagctcatctctcacatactaaagattgctcacaaatattagttatactttcgttg 202  Q
    ||||||||||||||||||| |||||||||||||| ||||| ||||| |||| ||||||||| |||||||||||||||||||| ||  ||  ||||| |||    
T  1782679 tgataaaggattcagatcacatggtcatgttctctaaacctaaaaaactcacctctcacattctaaagattgctcacaaatactaaataagctttcattg 1782580  T
Q  203 gtttttt 209  Q
    |||||||    
T  1782579 gtttttt 1782573  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 184
Target Start/End: Complemental strand, 1800471 - 1800378
Alignment:
Q  91 ttgagctgaatgtgataaaggattcagatcaaatggtcatgttctccaaaccaaaaaagctcatctctcacatactaaagattgctcacaaata 184  Q
    ||||| |||| |||||||||||||||||||| ||||||||||| || |||||| ||||||||| ||||||||| |||||  |||||| ||||||    
T  1800471 ttgaggtgaaagtgataaaggattcagatcacatggtcatgttttctaaaccagaaaagctcacctctcacattctaaaagttgctcgcaaata 1800378  T

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Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 73 - 209
Target Start/End: Original strand, 19790003 - 19790138
Alignment:
Q  73 agagaactgatccatgtattgagctgaatgtgataaaggattcagatcaaatggtcatgttctccaaaccaaaaaagctcatctctcacatactaaagat 172  Q
    ||||||||| ||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||    
T  19790003 agagaactggtccatatgttgaggtgaatgtgataaaggattcagatcaaatggtcatgttctccaaaccaaaaaa-cttaactctcacatactaaagat 19790101  T
Q  173 tgctcacaaatattagttatactttcgttggtttttt 209  Q
    | |||||||||||||| ||| ||||| ||| ||||||    
T  19790102 ttctcacaaatattagatatgctttcattgttttttt 19790138  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 41324631 - 41324592
Alignment:
Q  97 tgaatgtgataaaggattcagatcaaatggtcatgttctc 136  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  41324631 tgaatgtgataaaggattcagatcacatggtcatgttctc 41324592  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 47249691 - 47249730
Alignment:
Q  97 tgaatgtgataaaggattcagatcaaatggtcatgttctc 136  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  47249691 tgaatgtgataaaggattcagatcacatggtcatgttctc 47249730  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 47249727 - 47249780
Alignment:
Q  156 tctcacatactaaagattgctcacaaatattagttatactttcgttggtttttt 209  Q
    ||||||||||||||||||||||||||||||||  ||| ||||| ||| ||||||    
T  47249727 tctcacatactaaagattgctcacaaatattatatatgctttcattgttttttt 47249780  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 41324595 - 41324541
Alignment:
Q  156 tctcacatactaaagattgctcacaaatattagttatactttcgttggttttttg 210  Q
    ||||||||||||| ||||||||||||||||||| ||| ||||  ||| |||||||    
T  41324595 tctcacatactaatgattgctcacaaatattagatatgcttttattgattttttg 41324541  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 25729996 - 25730102
Alignment:
Q  78 actgatccatgtattgagctgaatgtgataaaggattcagatcaaatggtcatgttctccaaaccaaaaaagctcatctctcacatactaaagattgctc 177  Q
    |||| ||||| | ||||| |||| |||||||| | ||||||||| |||||||||||||||||||||||||| |||| ||||||||| |||||||||||||    
T  25729996 actggtccatatgttgaggtgaaagtgataaatggttcagatcatatggtcatgttctccaaaccaaaaaaactcacctctcacattctaaagattgctc 25730095  T
Q  178 acaaata 184  Q
    |||||||    
T  25730096 acaaata 25730102  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 32315657 - 32315559
Alignment:
Q  8 agaagtcttcgttatttgcaaaggagacattttcattagagaagatatgcaattatgaataattaagagaactgatccatgtattgagctgaatgtgat 106  Q
    |||||||||| |||| | |||||||||||||||||||||||| |||||||||||||| |||||| ||||||||| ||||| | ||||| ||||||||||    
T  32315657 agaagtcttcattatctacaaaggagacattttcattagagaggatatgcaattatggataattgagagaactggtccatatgttgaggtgaatgtgat 32315559  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 4845215 - 4845159
Alignment:
Q  97 tgaatgtgataaaggattcagatcaaatggtcatgttctccaaaccaaaaaagctca 153  Q
    |||||||||||| |||||||||||| || ||||||||| | ||| ||||||||||||    
T  4845215 tgaatgtgataatggattcagatcacatagtcatgttcactaaagcaaaaaagctca 4845159  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 20905237 - 20905184
Alignment:
Q  156 tctcacatactaaagattgctcacaaatattagttatactttcgttggtttttt 209  Q
    ||||||||||||| ||||||||||||||||||| ||| ||||  ||||||||||    
T  20905237 tctcacatactaatgattgctcacaaatattagatatgcttttattggtttttt 20905184  T

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