View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17572_low_2 (Length: 341)
Name: NF17572_low_2
Description: NF17572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17572_low_2 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 23062805 - 23062503
Alignment:
| Q |
18 |
ggatattgttgttagagaagtgggtgatgggaataatactttgttttggaaaaactagggggttttccnnnnnnnnnnnnctctcatttgactatcaata |
117 |
Q |
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||||| ||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||| |
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| T |
23062805 |
ggataatgttgttagaggagtgagtgatgggaataatactttgttttggaaaaattagggggttttccaaaaaa------ctctcatttggctatcaata |
23062712 |
T |
|
| Q |
118 |
ttatctcgatatcagtgttgtatactattttgaaggacgagaatgagaggatttttagtcaaaagattgatcttctcacatctttactcgaaaaggtcaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
23062711 |
ttatctcgatatcagtgttgtatactattttgaaggacgagaatgagaggatttttaatcaaaagattgatcttctcacatctttattcgaaaaggtcaa |
23062612 |
T |
|
| Q |
218 |
gagtcattcgtattgatggttaaaagtgtgttatgtattgcttgattttgattaccttacttggaggttgaatcctttgatgtgtttaaagacactttcc |
317 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
23062611 |
gagtcatttgtattgatggttaaaagtgtgttatgtattgcttgattttgattaccttacttggaggttgaatcctttggtgtgattaaagacactttcc |
23062512 |
T |
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| Q |
318 |
tatgttttt |
326 |
Q |
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||||||||| |
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| T |
23062511 |
tatgttttt |
23062503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 279
Target Start/End: Original strand, 13108485 - 13108524
Alignment:
| Q |
240 |
aaagtgtgttatgtattgcttgattttgattaccttactt |
279 |
Q |
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| T |
13108485 |
aaagtgcgttatgtattgtttgattttgattaccttactt |
13108524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 45916306 - 45916369
Alignment:
| Q |
245 |
gtgttatgtattgcttgattttgattaccttacttggaggttgaatcctttgatgtgtttaaag |
308 |
Q |
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| T |
45916306 |
gtgttatgttttgtttaattttgattaccaaactttgaggcagaatcctttgatgtgtttaaag |
45916369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 114 - 325
Target Start/End: Complemental strand, 56824 - 56611
Alignment:
| Q |
114 |
aatattatctcgatatcagtgttgtatactattttgaaggacgagaatgagaggatttttagtcaaaagattgatcttctcacatctttactcgaaaagg |
213 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||| ||| ||||||||||||||||||| |||| |
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| T |
56824 |
aatattatctggatatcagtgttgtatactatttggaaggacatgaatgagaggatttttaatcaaaagatcgatattctcacatctttactcgagaagg |
56725 |
T |
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| Q |
214 |
tcaagagtcattcgtattgatggttaaaagtgtgttatgtattgcttgattttgatt--accttacttggaggttgaatcctttgatgtgtttaaagaca |
311 |
Q |
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|||||||||||| ||| | | ||||||||||||||||||||| |||||||||||| ||||||||| | |||||| |||||||||||||||||||| |
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| T |
56724 |
tcaagagtcatttatatcggttattaaaagtgtgttatgtattgtttgattttgattccgccttacttgaaagttgaaccctttgatgtgtttaaagacc |
56625 |
T |
|
| Q |
312 |
ctttcctatgtttt |
325 |
Q |
| |
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||||||| ||||| |
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| T |
56624 |
gtttcctaagtttt |
56611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 98 - 265
Target Start/End: Complemental strand, 38361211 - 38361044
Alignment:
| Q |
98 |
ctctcatttgactatcaatattatctcgatatcagtgttgtatactattttgaagga-cgagaatgagaggatttttagtcaaaagattgatcttctcac |
196 |
Q |
| |
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||||||||||||| ||||||||| || ||||||||| ||||| ||||| |||||| ||| |||| |||||| |||| | |||||| |||||||||||| |
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| T |
38361211 |
ctctcatttgactttcaatattacctggatatcagtaccgtatattatttggaaggatcga-aatgggaggatctttaattaaaagactgatcttctcac |
38361113 |
T |
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| Q |
197 |
atctttactcgaaaaggtcaagagtcattcgtattgatggttaaaagtgtgttatgtattgcttgattt |
265 |
Q |
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||||||||||||||||||||| | |||||| ||||| |||||||||| ||||||||||||| ||||||| |
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| T |
38361112 |
atctttactcgaaaaggtcaaaactcattcttattggtggttaaaagcgtgttatgtattgtttgattt |
38361044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 184 - 328
Target Start/End: Complemental strand, 27173383 - 27173240
Alignment:
| Q |
184 |
ttgatcttctcacatctttactcgaaaaggtcaagagtcattcgtattgatggttaaaagtgtgttatgtattgcttgattttgattaccttacttggag |
283 |
Q |
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|||||||||||||||||||||||| |||||| |||||| | ||||||| ||||||||| |||||| || ||| || |||||||||||| ||||| || |
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| T |
27173383 |
ttgatcttctcacatctttactcgtaaaggt-aagagttagacgtattggtggttaaaatcgtgttacgttttgtttaattttgattaccacacttgaag |
27173285 |
T |
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| Q |
284 |
gttgaatcctttgatgtgtttaaagacactttcctatgtttttct |
328 |
Q |
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||||||||||||||||||||||| || ||||||| |||||||| |
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| T |
27173284 |
attgaatcctttgatgtgtttaaatgcagtttcctaagtttttct |
27173240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 307
Target Start/End: Complemental strand, 29669171 - 29669139
Alignment:
| Q |
275 |
tacttggaggttgaatcctttgatgtgtttaaa |
307 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
29669171 |
tacttggaggctgaatcctttgatgtgtttaaa |
29669139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 209 - 326
Target Start/End: Complemental strand, 10258606 - 10258489
Alignment:
| Q |
209 |
aaaggtcaagagtcattcgtattgatggttaaaagtgtgttatgtattgcttgattttgattaccttacttggaggttgaatcctttgatgtgtttaaag |
308 |
Q |
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|||||||||||| | || || ||| |||||||||| ||| ||||| || |||||||||||||||||| |||||||||||||| |||||| ||||||||| |
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| T |
10258606 |
aaaggtcaagagcctttagtgttgctggttaaaagcgtgctatgttatgtttgattttgattaccttatttggaggttgaatcatttgatatgtttaaag |
10258507 |
T |
|
| Q |
309 |
acactttcctatgttttt |
326 |
Q |
| |
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|| ||||||| |||||| |
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| T |
10258506 |
gcaatttcctaagttttt |
10258489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 326
Target Start/End: Original strand, 39923809 - 39923975
Alignment:
| Q |
149 |
gaaggacgagaatgagaggatttttagtcaaaagattgatcttctcacatctttactcgaaaaggtcaagagtcattcgtattgatggttaaaagtgtgt |
248 |
Q |
| |
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||||||| ||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||| || | | | |||||||||| | | |
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| T |
39923809 |
gaaggacatgaatgagagaatctttaatcaaaagattgatcttctcacatctttactcgaaaaggtcaaaagcaa--cat-----tggttaaaagcgcat |
39923901 |
T |
|
| Q |
249 |
tatgtattgcttgattttgattaccttacttggaggttgaatcctttgatgtgtttaaagacactttcctatgttttt |
326 |
Q |
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||||||||| ||||||||||| ||||||||||||||||| |||| |||||||| ||| | ||||||| |||||| |
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| T |
39923902 |
tatgtattgtttgattttgat----ttacttggaggttgaattctttaatgtgtttgaaggtagtttcctaagttttt |
39923975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 98 - 221
Target Start/End: Complemental strand, 14341579 - 14341455
Alignment:
| Q |
98 |
ctctcatttgactatcaatattatctcgatatcagtgttgtatactattttgaaggacgagaatgagaggatttttagtcaaaagattgatcttctcaca |
197 |
Q |
| |
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||||| ||| ||| |||||||||||| ||||||| || || || || || |||||| ||||||||| || |||| |||||||| |||| |||||||| |
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| T |
14341579 |
ctctcgtttcactttcaatattatctggatatcaatgctgcatgttaattagaaggataggaatgagagaatctttaatcaaaagactgatattctcaca |
14341480 |
T |
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| Q |
198 |
tc-tttactcgaaaaggtcaagagt |
221 |
Q |
| |
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|| |||||||||||| ||||||||| |
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| T |
14341479 |
tcttttactcgaaaatgtcaagagt |
14341455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 308
Target Start/End: Complemental strand, 18024516 - 18024467
Alignment:
| Q |
259 |
ttgattttgattaccttacttggaggttgaatcctttgatgtgtttaaag |
308 |
Q |
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|||||| ||||||||| |||||||||||| |||||||| |||||||||| |
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| T |
18024516 |
ttgattatgattacctcacttggaggttgcatcctttgtcgtgtttaaag |
18024467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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