View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17572_low_5 (Length: 232)

Name: NF17572_low_5
Description: NF17572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17572_low_5
NF17572_low_5
[»] chr7 (15 HSPs)
chr7 (18-214)||(31080907-31081103)
chr7 (18-214)||(31092836-31093032)
chr7 (18-214)||(26264848-26265044)
chr7 (18-214)||(26324880-26325076)
chr7 (18-214)||(26430189-26430385)
chr7 (18-214)||(26445627-26445823)
chr7 (18-214)||(26696823-26697020)
chr7 (18-202)||(45382278-45382462)
chr7 (18-202)||(45397133-45397317)
chr7 (18-214)||(24582600-24582795)
chr7 (18-191)||(21541756-21541928)
chr7 (18-202)||(4135254-4135438)
chr7 (18-202)||(4150180-4150364)
chr7 (18-202)||(31119857-31120041)
chr7 (18-202)||(31134032-31134216)
[»] chr5 (9 HSPs)
chr5 (18-214)||(13432562-13432758)
chr5 (18-214)||(13443456-13443652)
chr5 (18-202)||(32596792-32596976)
chr5 (30-214)||(5632836-5633020)
chr5 (30-214)||(5647710-5647894)
chr5 (18-202)||(6869235-6869419)
chr5 (18-202)||(6884359-6884543)
chr5 (43-214)||(31816446-31816618)
chr5 (43-214)||(31831476-31831648)
[»] chr3 (12 HSPs)
chr3 (18-214)||(28016153-28016349)
chr3 (18-214)||(28031471-28031667)
chr3 (18-214)||(51776895-51777091)
chr3 (18-214)||(51791981-51792177)
chr3 (18-214)||(5710178-5710374)
chr3 (18-214)||(5721088-5721284)
chr3 (18-214)||(5731991-5732187)
chr3 (18-214)||(5760181-5760377)
chr3 (18-202)||(47018356-47018540)
chr3 (18-202)||(47033270-47033454)
chr3 (30-214)||(26295815-26295999)
chr3 (88-125)||(16602578-16602615)
[»] chr8 (8 HSPs)
chr8 (18-214)||(15902863-15903059)
chr8 (40-214)||(29825677-29825852)
chr8 (40-214)||(29839402-29839577)
chr8 (18-202)||(19198401-19198587)
chr8 (58-202)||(19213466-19213612)
chr8 (88-214)||(19669425-19669551)
chr8 (88-214)||(19684787-19684913)
chr8 (132-202)||(19283593-19283665)
[»] chr1 (6 HSPs)
chr1 (18-214)||(36507878-36508074)
chr1 (18-214)||(10935923-10936119)
chr1 (18-214)||(10955114-10955310)
chr1 (18-214)||(9079450-9079646)
chr1 (18-214)||(48094920-48095116)
chr1 (40-214)||(14413948-14414123)
[»] scaffold1648 (1 HSPs)
scaffold1648 (18-214)||(484-680)
[»] chr6 (4 HSPs)
chr6 (18-214)||(4729223-4729419)
chr6 (22-214)||(8188948-8189140)
chr6 (18-209)||(27619246-27619439)
chr6 (18-209)||(27634856-27635049)
[»] chr4 (6 HSPs)
chr4 (18-206)||(5000835-5001023)
chr4 (18-206)||(5015901-5016089)
chr4 (40-214)||(3912083-3912258)
chr4 (88-125)||(34179227-34179264)
chr4 (88-125)||(39847040-39847077)
chr4 (88-125)||(39860651-39860688)
[»] scaffold0336 (1 HSPs)
scaffold0336 (18-214)||(3148-3344)
[»] chr2 (11 HSPs)
chr2 (18-214)||(16160571-16160767)
chr2 (18-214)||(16171472-16171668)
chr2 (18-214)||(16860036-16860232)
chr2 (18-214)||(27798596-27798792)
chr2 (18-214)||(27813685-27813881)
chr2 (18-202)||(37920401-37920585)
chr2 (18-202)||(37935339-37935523)
chr2 (88-214)||(2731400-2731526)
chr2 (88-125)||(25909742-25909779)
chr2 (88-125)||(34154081-34154118)
chr2 (88-125)||(34164937-34164974)


Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 31081103 - 31080907
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31081103 gtttgcaccctctgttcatgttaatttttatcaataaattccaagaaatttactatgtcattttactatttttcttgataattttcagtggtattttact 31081004  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31081003 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 31080907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 31093032 - 31092836
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31093032 gtttgcaccctctgttcatgttaatttttatcaataaattccaagaaatttactatgtcattttactatttttcttgataattttcagtggtattttact 31092933  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31092932 tggaaaagttgataaaaattttagtgttgttttgtcaagggcttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 31092836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 26265044 - 26264848
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  26265044 gtttgcacccttggttcatgttaattttcatcaataaattccaagaaatttactatgtcatttcactatttttcttgataattttcagtggtattttact 26264945  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26264944 tggaaaagttgataaaaattttagtgttgttttgtcaagggtctttactattttaagtcatttttctcgcgtttctacccgttacttcatgtacata 26264848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 26325076 - 26324880
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  26325076 gtttgcacccttggttcatgttaattttcatcaataaattccaagaaatttactatgtcatttcactatttttcttgataattttcagtggtattttact 26324977  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26324976 tggaaaagttgataaaaattttagtgttgttttgtcaagggtctttactattttaagtcatttttctcgcgtttctacccgttacttcatgtacata 26324880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 26430189 - 26430385
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  26430189 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttgct 26430288  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||| ||||    
T  26430289 tggaaaagttggtaaaaattttagtgttgttttgtcaagggtttttactattttaagtcacttttctcgcatttttacctgttacttcatgtgcata 26430385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 26445627 - 26445823
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  26445627 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtatttttct 26445726  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||| ||||    
T  26445727 tggaaaagttggtaaaaattttagtgttgttttgtcaagggtttttactattttaagtcacttttctcgcatttttacctgttacttcatgtgcata 26445823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 26696823 - 26697020
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  26696823 gtttgcaccctttgttcatgctaattttcatcaataaattccaagaaatttgccatgtcattttactatttttcttgataattttcagtggtattttgct 26696922  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaaggg-tttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  26696923 tggaaaagttggtaaaaattttagtgttgttttgtcaagggttttttactattttaagtcacttttctcgcatttttacccgttacttcatgtgcata 26697020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 45382278 - 45382462
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    |||||||||| ||||||||| ||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  45382278 gtttgcacccgttgttcatgctaatttttaccaataaattccaagaaatttactacgtcattttactatttttcttgataattttcagtggtattttact 45382377  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttac 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||    
T  45382378 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttgagtcacttttctcgcatttttacccgttac 45382462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 45397133 - 45397317
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    |||||||||| ||||||||| ||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  45397133 gtttgcacccgttgttcatgctaatttttaccaataaattccaagaaatttactacgtcattttactatttttcttgataattttcagtggtattttact 45397232  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttac 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||    
T  45397233 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttgagtcacttttctcgcatttttacccgttac 45397317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 24582795 - 24582600
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    |||||||||| ||||||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24582795 gtttgcacccgttgttcatgctaatttttaccaataaattccaagaaaattaccatgtcattttgctatttttcttgataattttcagtggtattttact 24582696  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    ||||||||||| | |||||||| |||||| ||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||| ||| ||||    
T  24582695 tggaaaagttggt-aaaattttggtgttgatttgtcaagagtttttactattttaagtcacttttctcgcatttttacccgttacttcgtgtgcata 24582600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 21541756 - 21541928
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    |||||||||| ||||||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21541756 gtttgcacccgttgttcatgctaatttttaccaataaattccaagaaaattaccatgtcattttgctatttttcttgataattttcagtggtattttact 21541855  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcattt 191  Q
    ||||||||||| | |||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  21541856 tggaaaagttggt-aaaattttggtgttgatttgtcaagggtttttactattttaagtcacttttctcgcattt 21541928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 4135438 - 4135254
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactat-ttttcttgataattttcagtggtattttac 116  Q
    |||||||||||||||||||| ||||||| | ||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||| |||||||    
T  4135438 gtttgcaccctttgttcatgctaattttcaccaataaattccaagaaaattaccatgtcattttactattttttcttgataaatttcagtggcattttac 4135339  T
Q  117 ttggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttac 202  Q
    |||||||||||| | |||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  4135338 ttggaaaagttggt-aaaattttggtgttgatttgtcaagggtttttactattttaagtcacttttctcgcatttttacccgttac 4135254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 4150364 - 4150180
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactat-ttttcttgataattttcagtggtattttac 116  Q
    |||||||||||||||||||| ||||||| | ||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||| |||||||    
T  4150364 gtttgcaccctttgttcatgctaattttcaccaataaattccaagaaaattaccatgtcattttactattttttcttgataaatttcagtggcattttac 4150265  T
Q  117 ttggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttac 202  Q
    |||||||||||| | |||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  4150264 ttggaaaagttggt-aaaattttggtgttgatttgtcaagggtttttactattttaagtcacttttctcgcatttttacccgttac 4150180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 31119857 - 31120041
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttacta-tttttcttgataattttcagtggtattttac 116  Q
    |||||||||||||||||||| ||||||| | ||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  31119857 gtttgcaccctttgttcatgctaattttcaccaataaattccaagaaaattaccatgacattttactattttttcttgataattttcagtggtattttac 31119956  T
Q  117 ttggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttac 202  Q
    |||||||||||| | |||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||    
T  31119957 ttggaaaagttggt-aaaattttggtgttgatttgtcaagggtttttactattttaagtcacttttctcgcatttttaccctttac 31120041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 31134032 - 31134216
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttacta-tttttcttgataattttcagtggtattttac 116  Q
    |||||||||||||||||||| ||||||| | ||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  31134032 gtttgcaccctttgttcatgctaattttcaccaataaattccaagaaaattaccatgacattttactattttttcttgataattttcagtggtattttac 31134131  T
Q  117 ttggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttac 202  Q
    |||||||||||| | |||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||    
T  31134132 ttggaaaagttggt-aaaattttggtgttgatttgtcaagggtttttactattttaagtcacttttctcgcatttttaccctttac 31134216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 13432758 - 13432562
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13432758 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttactatgtcattttactatttttcttgataattttcagtggtattttact 13432659  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13432658 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtgcata 13432562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 13443652 - 13443456
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13443652 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttactatgtcattttactatttttcttgataattttcagtggtattttact 13443553  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13443552 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtgcata 13443456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 32596976 - 32596792
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    |||||||||| ||||||||| ||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  32596976 gtttgcacccgttgttcatgctaatttttaccaataaattccaagaaatttactacgtcattttactatttttcttgataattttcagtggtattttact 32596877  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttac 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||    
T  32596876 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttgagtcacttttctcgcatttttacccgttac 32596792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 30 - 214
Target Start/End: Original strand, 5632836 - 5633020
Alignment:
Q  30 tgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttacttggaaaagttga 129  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5632836 tgttcatgttaatttttatcaataaattccaagaaatttactatgtcattttactatttttcttgttaattttcagtggtattttacttggaaaagttga 5632935  T
Q  130 taaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||| |||||||| ||| | ||||||||||||| ||| ||||    
T  5632936 taaaaattttagtgttgttttgtcaagggtttttacaattttgagtcttttttctcacatgtttacccgttacttcgtgtgcata 5633020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 30 - 214
Target Start/End: Original strand, 5647710 - 5647894
Alignment:
Q  30 tgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttacttggaaaagttga 129  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5647710 tgttcatgttaatttttatcaataaattccaagaaatttactatgtcattttactatttttcttgttaattttcagtggtattttacttggaaaagttga 5647809  T
Q  130 taaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||| |||||||| ||| | ||||||||||||| ||| ||||    
T  5647810 taaaaattttagtgttgttttgtcaagggtttttacaattttgagtcttttttctcacatgtttacccgttacttcgtgtgcata 5647894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 6869235 - 6869419
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttacta-tttttcttgataattttcagtggtattttac 116  Q
    |||||||||||||||||||| ||||||| | ||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  6869235 gtttgcaccctttgttcatgctaattttcaccaataaattccaagaaaattaccatgtcattttactattttttcttgataagtttcagtggtattttac 6869334  T
Q  117 ttggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttac 202  Q
    |||||||||||| | |||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  6869335 ttggaaaagttggt-aaaattttggtgttgatttgtcaagggtttttactattttaagtcacttttctcgcatttttacccgttac 6869419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 6884359 - 6884543
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttacta-tttttcttgataattttcagtggtattttac 116  Q
    |||||||||||||||||||| ||||||| | ||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  6884359 gtttgcaccctttgttcatgctaattttcaccaataaattccaagaaaattaccatgtcattttactattttttcttgataagtttcagtggtattttac 6884458  T
Q  117 ttggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttac 202  Q
    |||||||||||| | |||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  6884459 ttggaaaagttggt-aaaattttggtgttgatttgtcaagggtttttactattttaagtcacttttctcgcatttttacccgttac 6884543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 31816618 - 31816446
Alignment:
Q  43 ttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttacttggaaaagttgataaaaattttagt 142  Q
    |||||||||||||||||||| ||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| ||    
T  31816618 ttttatcaataaattccaaggaatttactatgtcattttactattcttcttgacaattttcagtggtattttacttggaaaagttggtaaaaattttggt 31816519  T
Q  143 gttgttttgtcaagggtttttactattttaagtcatttttctcgca-tttctacccgttacttcatgtacata 214  Q
    ||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| ||||    
T  31816518 gttgtttcgtcaagggtttttactatttcaagtcgtttttctcgcattttctacccgttacttcatgtgcata 31816446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 31831648 - 31831476
Alignment:
Q  43 ttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttacttggaaaagttgataaaaattttagt 142  Q
    |||||||||||||||||||| ||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| ||    
T  31831648 ttttatcaataaattccaaggaatttactatgtcattttactattcttcttgacaattttcagtggtattttacttggaaaagttggtaaaaattttggt 31831549  T
Q  143 gttgttttgtcaagggtttttactattttaagtcatttttctcgca-tttctacccgttacttcatgtacata 214  Q
    ||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| ||||    
T  31831548 gttgtttcgtcaagggtttttactatttcaagtcgtttttctcgcattttctacccgttacttcatgtgcata 31831476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 28016153 - 28016349
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28016153 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttactatgtcattttactatttttcttgataattttcagtggtattttact 28016252  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28016253 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcacgtacata 28016349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 28031471 - 28031667
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28031471 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttactatgtcattttactatttttcttgataattttcagtggtattttact 28031570  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28031571 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcacgtacata 28031667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 51776895 - 51777091
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  51776895 gtttacaccctttgttcatgttaattttcatcaataaattccaagaaatttaccatgtcatttcactatttttcttgataattttcagtggtattttact 51776994  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51776995 tggaaaagttgataaaaattttagtgttgttttgtcaagggtctttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 51777091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 51791981 - 51792177
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  51791981 gtttacaccctttgttcatgttaattttcatcaataaattccaagaaatttaccatgtcatttcactatttttcttgataattttcagtggtattttact 51792080  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51792081 tggaaaagttgataaaaattttagtgttgttttgtcaagggtctttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 51792177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 5710178 - 5710374
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5710178 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttgct 5710277  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||| ||||    
T  5710278 tggaaaagttggtaaaaattttagtgttgttttgtcaagggtttttactattttaagtcacttttctcgcatttttacctgttacttcatgtgcata 5710374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 5721088 - 5721284
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5721088 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttgct 5721187  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||| ||||    
T  5721188 tggaaaagttggtaaaaattttagtgttgttttgtcaagggtttttactattttaagtcacttttctcgcatttttacctgttacttcatgtgcata 5721284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 5731991 - 5732187
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5731991 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttgct 5732090  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||| ||||    
T  5732091 tggaaaagttggtaaaaattttagtgttgttttgtcaagggtttttactattttaagtcacttttctcgcatttttacctgttacttcatgtgcata 5732187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 5760377 - 5760181
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5760377 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttgct 5760278  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||| ||||    
T  5760277 tggaaaagttggtaaaaattttagtgttgttttgtcaagggtttttactattttaagtcacttttctcgcatttttacctgttacttcatgtgcata 5760181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 47018356 - 47018540
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    |||||||||| ||||||||| ||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  47018356 gtttgcacccgttgttcatgctaatttttaccaataaattccaagaaatttactacgtcattttactatttttcttgataattttcagtggtattttact 47018455  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttac 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||    
T  47018456 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttgagtcacttttctcgcatttttacccgttac 47018540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 47033270 - 47033454
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    |||||||||| ||||||||| ||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  47033270 gtttgcacccgttgttcatgctaatttttaccaataaattccaagaaatttactacgtcattttactatttttcttgataattttcagtggtattttact 47033369  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttac 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||    
T  47033370 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttgagtcacttttctcgcatttttacccgttac 47033454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 30 - 214
Target Start/End: Original strand, 26295815 - 26295999
Alignment:
Q  30 tgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttacttggaaaagttga 129  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26295815 tgttcatgttaatttttatcaataaattccaagaaatttactatgtcattttactatttttcttgttaattttcagtggtattttacttggaaaagttga 26295914  T
Q  130 taaaaattttagtgttgttttgtcaaggg-tttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    ||||||||||||||| ||||||||||||| ||||||| || || |||| |||||||| ||||| |||||||| |||| ||| ||||    
T  26295915 taaaaattttagtgtcgttttgtcaagggttttttacaatcttgagtc-tttttctcacatttttacccgttgcttcgtgtgcata 26295999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 16602578 - 16602615
Alignment:
Q  88 tttcttgataattttcagtggtattttacttggaaaag 125  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  16602578 tttcttgataatttttagtggtattttgcttggaaaag 16602615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 15903059 - 15902863
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15903059 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttactatgtcattttactatttttcttgataattttcagtggtattttact 15902960  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  15902959 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttttacccgttacttcatgtgcata 15902863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 40 - 214
Target Start/End: Original strand, 29825677 - 29825852
Alignment:
Q  40 aatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttacttggaaaagttgataaaaa-ttt 138  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  29825677 aatttttatcaataaattccaagaaatttactatgtcattttactattcttcttgataattttcagtggtattttacttggaaaagttggtaaaaatttt 29825776  T
Q  139 tagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  29825777 tagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccattacttcatgtgcata 29825852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 40 - 214
Target Start/End: Original strand, 29839402 - 29839577
Alignment:
Q  40 aatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttacttggaaaagttgat-aaaaattt 138  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  29839402 aatttttatcaataaattccaagaaatttactatgtcattttactattcttcttgataattttcagtggtattttacttggaaaagttggtaaaaaattt 29839501  T
Q  139 tagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  29839502 tagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccattacttcatgtgcata 29839577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 19198587 - 19198401
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttac-tatttttcttgataattttcagtggtattttac 116  Q
    |||||||||||||||||||| ||||||| | ||||||||||||||||| ||||||||||||||||| | |||||||||||||| ||||||||||||||||    
T  19198587 gtttgcaccctttgttcatgctaattttcaccaataaattccaagaaaattaccatgtcattttacttttttttcttgataatgttcagtggtattttac 19198488  T
Q  117 ttggaaaagttgataaaaattttagtgttgttttgtcaaggg--tttttactattttaagtcatttttctcgcatttctacccgttac 202  Q
    |||||||||||| | |||||||| |||||| |||||||||||  ||||||||||||||||||| ||||||||||||| ||||||||||    
T  19198487 ttggaaaagttggt-aaaattttggtgttgatttgtcaagggtttttttactattttaagtcacttttctcgcatttttacccgttac 19198401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 58 - 202
Target Start/End: Complemental strand, 19213612 - 19213466
Alignment:
Q  58 ccaagaaatttaccatgtcattttactattttt-cttgataattttcagtggtattttacttggaaaagttgataaaaattttagtgttgttttgtcaag 156  Q
    |||||||| |||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||| | |||||||| |||||| |||||||||    
T  19213612 ccaagaaaattaccatgtcattttacttttttttcttgataatgttcagtggtattttacttggaaaagttggt-aaaattttggtgttgatttgtcaag 19213514  T
Q  157 gg--tttttactattttaagtcatttttctcgcatttctacccgttac 202  Q
    ||  ||||||||||||||||||| ||||||||||||| ||||||||||    
T  19213513 ggtttttttactattttaagtcacttttctcgcatttttacccgttac 19213466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 214
Target Start/End: Original strand, 19669425 - 19669551
Alignment:
Q  88 tttcttgataattttcagtggtattttacttggaaaagt-tgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcg 186  Q
    ||||||||||||||| ||||||||||  ||||||||||  || ||||||  |  |||||||||||| | |||||||||| | ||||||||||||||||||    
T  19669425 tttcttgataatttttagtggtatttcgcttggaaaagactggtaaaaacatatgtgttgttttgtta-gggtttttaccactttaagtcatttttctcg 19669523  T
Q  187 catttctacccgttacttcatgtacata 214  Q
    ||||||||||||||||||||||| ||||    
T  19669524 catttctacccgttacttcatgtgcata 19669551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 214
Target Start/End: Original strand, 19684787 - 19684913
Alignment:
Q  88 tttcttgataattttcagtggtattttacttggaaaagt-tgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcg 186  Q
    ||||||||||||||| ||||||||||  ||||||||||  || ||||||  |  |||||||||||| | |||||||||| | ||||||||||||||||||    
T  19684787 tttcttgataatttttagtggtatttcgcttggaaaagactggtaaaaacatatgtgttgttttgtta-gggtttttaccactttaagtcatttttctcg 19684885  T
Q  187 catttctacccgttacttcatgtacata 214  Q
    ||||||||||||||||||||||| ||||    
T  19684886 catttctacccgttacttcatgtgcata 19684913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 19283665 - 19283593
Alignment:
Q  132 aaaattttagtgttgttttgtcaagggttttt--actattttaagtcatttttctcgcatttctacccgttac 202  Q
    |||||||| |||||| ||||||||||||||||  |||||||||||||| ||||||||||||| ||||||||||    
T  19283665 aaaattttggtgttgatttgtcaagggtttttttactattttaagtcacttttctcgcatttttacccgttac 19283593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 36507878 - 36508074
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36507878 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttactatgtcattttactatttttcttgataattttcagtggtattttact 36507977  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  36507978 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttgagtcatttttctcacatttctacccgttacttcatgtacata 36508074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 10935923 - 10936119
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  10935923 gtttgcaccctctgttcatgttaatttttatcaataaattccaagaaatttactatatcattttactatttttcttgataattttcagtggtattttact 10936022  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  10936023 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttctctcgcatttctacccgttacttcatgtgcata 10936119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 10955114 - 10955310
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  10955114 gtttgcaccctctgttcatgttaatttttatcaataaattccaagaaatttactatatcattttactatttttcttgataattttcagtggtattttact 10955213  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  10955214 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttctctcgcatttctacccgttacttcatgtgcata 10955310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 9079450 - 9079646
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||    
T  9079450 gtttgcaccctctgttcatgttaatttttatcaataaattccaagaaatttactatatcattttactatttttcttaataattttcagtggtattttact 9079549  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  9079550 tggaaaaggtgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttctctcgcatttctacccgttacttcatgtgcata 9079646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 48094920 - 48095116
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  48094920 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttactatgtcattttactatttttcttgttaattttcagtggtattttact 48095019  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||| ||| | ||||||||||||| ||| ||||    
T  48095020 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttacaattttgagtcttttttctcacatgtttacccgttacttcgtgtgcata 48095116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 40 - 214
Target Start/End: Complemental strand, 14414123 - 14413948
Alignment:
Q  40 aatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttacttggaaaagttgataaaaa-ttt 138  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  14414123 aatttttatcaataaattccaagaaatttactatgtcattttactattcttcttgataattttcagtggtattttacttggaaaagttggtaaaaatttt 14414024  T
Q  139 tagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  14414023 tagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccattacttcatgtgcata 14413948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1648 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: scaffold1648
Description:

Target: scaffold1648; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 680 - 484
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  680 gtttgcacccttcgttcatgttagtttttatcaataaattccaagaaatttaccacgtcattttactatttttcttgataattttcagtggtattttact 581  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  580 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcacgtacata 484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 4729419 - 4729223
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4729419 gtttgcacccttcgttcatgttagtttttatcaataaattccaagaaatttaccacgtcattttactatttttcttgataattttcagtggtattttact 4729320  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4729319 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcacgtacata 4729223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 8189140 - 8188948
Alignment:
Q  22 gcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttacttgga 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8189140 gcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttacttgga 8189041  T
Q  122 aaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  8189040 aaagttggtaaaaattttagtgttgttttgtcaagggtttttactattttaagtcacttttctcgcatttttacccgttacttcatgtgcata 8188948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 27619439 - 27619246
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  27619439 gtttgcaccctttattcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttggtaattttcagtggtattttgct 27619340  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttacta--ttttaagtcatttttctcgcatttctacccgttacttcatgt 209  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||  |||| ||||| ||||||||||||| |||||||||||||||||    
T  27619339 tggaaaagttggtaaaaattttagtgttgttttgtcaagggtttttactatttttttagtcacttttctcgcatttttacccgttacttcatgt 27619246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 27635049 - 27634856
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  27635049 gtttgcaccctttattcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttggtaattttcagtggtattttgct 27634950  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttacta--ttttaagtcatttttctcgcatttctacccgttacttcatgt 209  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||  |||| ||||| ||||||||||||| |||||||||||||||||    
T  27634949 tggaaaagttggtaaaaattttagtgttgttttgtcaagggtttttactatttttttagtcacttttctcgcatttttacccgttacttcatgt 27634856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 5000835 - 5001023
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5000835 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttactatgtcattttactatttttcttgataattttcagtggtattttact 5000934  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttca 206  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5000935 tggaaaagttggtaaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttca 5001023  T

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Target: chr4; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 5015901 - 5016089
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5015901 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttactatgtcattttactatttttcttgataattttcagtggtattttact 5016000  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttca 206  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5016001 tggaaaagttggtaaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttca 5016089  T

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Target: chr4; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 40 - 214
Target Start/End: Original strand, 3912083 - 3912258
Alignment:
Q  40 aatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttacttggaaaagttgataaaaa-ttt 138  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  3912083 aatttttatcaataaattccaagaaatttactatgtcattttactattcttcttgataattttcagtggtattttacttggaaaagttggtaaaaatttt 3912182  T
Q  139 tagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3912183 tagtgttgttttgtcaagggtttttaccattttaagtcatttttctcgcatttctacccgttacttcatgtgcata 3912258  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 34179264 - 34179227
Alignment:
Q  88 tttcttgataattttcagtggtattttacttggaaaag 125  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  34179264 tttcttgataatttttagtggtattttgcttggaaaag 34179227  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 39847040 - 39847077
Alignment:
Q  88 tttcttgataattttcagtggtattttacttggaaaag 125  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  39847040 tttcttgataatttttagtggtattttgcttggaaaag 39847077  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 39860651 - 39860688
Alignment:
Q  88 tttcttgataattttcagtggtattttacttggaaaag 125  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  39860651 tttcttgataatttttagtggtattttgcttggaaaag 39860688  T

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Target: scaffold0336 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: scaffold0336
Description:

Target: scaffold0336; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 3148 - 3344
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3148 gtttgcaccctttgttcatgttaatttttgtcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 3247  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  3248 tggaaaagttggtaaaaattttagtgttgttttgtcaagggtttttactattttaagtcacttttctcgcatttttacccgttacttcatgtgcata 3344  T

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Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 16160571 - 16160767
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  16160571 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttgct 16160670  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||| ||||    
T  16160671 tggaaaagttggtaaaaattttagtgttgttttgtcaagggtttttactattttaagtcacttttctcgcatttttacctgttacttcatgtgcata 16160767  T

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Target: chr2; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 16171472 - 16171668
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  16171472 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttgct 16171571  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||| ||||    
T  16171572 tggaaaagttggtaaaaattttagtgttgttttgtcaagggtttttactattttaagtcacttttctcgcatttttacctgttacttcatgtgcata 16171668  T

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Target: chr2; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 16860232 - 16860036
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  16860232 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttgct 16860133  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||| ||||    
T  16860132 tggaaaagttggtaaaaattttagtgttgttttgtcaagggtttttactattttaagtcacttttctcgcatttttacctgttacttcatgtgcata 16860036  T

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Target: chr2; HSP #4
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 27798596 - 27798792
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27798596 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttgct 27798695  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||| ||||    
T  27798696 tggaaaagttggtaaaaattttagtgttgttttgtcaagggtttttactattttaagtcacttttctcgcatttttacctgttacttcatgtgcata 27798792  T

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Target: chr2; HSP #5
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 27813685 - 27813881
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27813685 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttgct 27813784  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttacttcatgtacata 214  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||| ||||    
T  27813785 tggaaaagttggtaaaaattttagtgttgttttgtcaagggtttttactattttaagtcacttttctcgcatttttacctgttacttcatgtgcata 27813881  T

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Target: chr2; HSP #6
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 37920401 - 37920585
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    |||||||||| ||||||||| ||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  37920401 gtttgcacccgttgttcatgctaatttttaccaataaattccaagaaatttactacgtcattttactatttttcttgataattttcagtggtattttact 37920500  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttac 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||    
T  37920501 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttgagtcacttttctcgcatttttacccgttac 37920585  T

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Target: chr2; HSP #7
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 37935339 - 37935523
Alignment:
Q  18 gtttgcaccctttgttcatgttaatttttatcaataaattccaagaaatttaccatgtcattttactatttttcttgataattttcagtggtattttact 117  Q
    |||||||||| ||||||||| ||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  37935339 gtttgcacccgttgttcatgctaatttttaccaataaattccaagaaatttactacgtcattttactatttttcttgataattttcagtggtattttact 37935438  T
Q  118 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcgcatttctacccgttac 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||    
T  37935439 tggaaaagttgataaaaattttagtgttgttttgtcaagggtttttactattttgagtcacttttctcgcatttttacccgttac 37935523  T

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Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 214
Target Start/End: Original strand, 2731400 - 2731526
Alignment:
Q  88 tttcttgataattttcagtggtattttacttggaaaagt-tgataaaaattttagtgttgttttgtcaagggtttttactattttaagtcatttttctcg 186  Q
    ||||||||||||||| ||||||||||  ||||||||||  || ||||||  |  |||||||||||| | |||||||||| | ||||||||||||||||||    
T  2731400 tttcttgataatttttagtggtatttcgcttggaaaagactggtaaaaacatatgtgttgttttgtta-gggtttttaccactttaagtcatttttctcg 2731498  T
Q  187 catttctacccgttacttcatgtacata 214  Q
    ||||||||||||||||||||||| ||||    
T  2731499 catttctacccgttacttcatgtgcata 2731526  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 25909779 - 25909742
Alignment:
Q  88 tttcttgataattttcagtggtattttacttggaaaag 125  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  25909779 tttcttgataatttttagtggtattttgcttggaaaag 25909742  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 34154081 - 34154118
Alignment:
Q  88 tttcttgataattttcagtggtattttacttggaaaag 125  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  34154081 tttcttgataatttttagtggtattttgcttggaaaag 34154118  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 34164937 - 34164974
Alignment:
Q  88 tttcttgataattttcagtggtattttacttggaaaag 125  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  34164937 tttcttgataatttttagtggtattttgcttggaaaag 34164974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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