View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17573_low_2 (Length: 318)
Name: NF17573_low_2
Description: NF17573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17573_low_2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 10569192 - 10569496
Alignment:
| Q |
14 |
aatatcaaacacactcaagcaagaaaaaatgtataacttgaaagaatagataatgttaaatgaccttaaaggtagaccttcctatatagaaaagtaacag |
113 |
Q |
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| T |
10569192 |
aatatcaaacacactcaagcaagaaaagatgtataacttgaaagaatagataatgttaaatgaccttaaaggtagaccttcctatatagaaaagtaacag |
10569291 |
T |
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| Q |
114 |
tagcatcaatctcagtttaaaacaaaaaattacaaaataattccttaataaattcccaataactcatactttcataagcttatagtatcgaaatccttat |
213 |
Q |
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| T |
10569292 |
tagcatcaatctcagtttaaaacaaaaaattacaaaataattccttaataaattcccaataactcatactttcataagcttatagtatcgaaatcctttt |
10569391 |
T |
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| Q |
214 |
aaataaaactatgatgatggtaacacttnnnnnnngctaaatctttaaaataacaatcatcttctctcaacaagtagcgatggttgattgctctgaaacg |
313 |
Q |
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| T |
10569392 |
aaataaacctatgatgatggtaacacttaaaaaaagctaaatctttaaaataacaatcatcttctttcaacaagtagcgatggttgattgctctgaaacg |
10569491 |
T |
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| Q |
314 |
catat |
318 |
Q |
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||||| |
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| T |
10569492 |
catat |
10569496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 125 - 318
Target Start/End: Original strand, 10551768 - 10551965
Alignment:
| Q |
125 |
tcagtttaaaacaaaaaa-ttacaaaataattccttaataaattcccaataactcatactttcataagcttatagtatcgaaatccttataaataaaact |
223 |
Q |
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| T |
10551768 |
tcagtttaaaacaaaaaaattacaaaataattccttaataa-ttcccaatacctcatactttcataagctaatagtatcgaaatccttaaaaataaaaca |
10551866 |
T |
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| Q |
224 |
atgatgatggtaacacttnnnnnnngc----taaatctttaaaataacaatcatcttctctcaacaagtagcgatggttgattgctctgaaacgcatat |
318 |
Q |
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| T |
10551867 |
atgatgatggtaacacttaaaaaaagcaaaatatatatttaaaataacaatcatcttctttcaacaagtagcgatggttgattgctctggaacacatat |
10551965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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