View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17574_high_1 (Length: 721)
Name: NF17574_high_1
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 663; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 19 - 705
Target Start/End: Original strand, 42842996 - 42843682
Alignment:
| Q |
19 |
atcagtttgttggggtggaaaacacagatgatttatcgtgggagatagacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaaga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42842996 |
atcagtttgttggggtggaaaacacagatgatttatcgtgggagatagacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaaga |
42843095 |
T |
|
| Q |
119 |
gctaagggttaccaatttaaagcttcagctttcggaagaagagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42843096 |
gctaagggttaccaatttaaagcttcagctttcggaagaagagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgt |
42843195 |
T |
|
| Q |
219 |
gaggaattgaggctgaaagagaaggagttgcataaacaaaaagagctttcggaagaggagattttcaagttgaagattcaaatcgagaagagtgagaatc |
318 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42843196 |
gaggaattgaagctgaaagagaaggagttgcataaacaaaaagtgctttcggaagaggagattttcaagttgaagattcaaattgagaagagtgagaatc |
42843295 |
T |
|
| Q |
319 |
agcatgataatgtgagcaaagaattgaacctgaaagagaaggagttgaataaacaaaaggagcttttaaaagaagagattttcaatttgaagattcaatt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42843296 |
agcatgataatgtgagcaaagaattgaacctgaaagagaaggagttgaataaacaaaaggagcttttaaaagaagagattttcaatttgaagattcaatt |
42843395 |
T |
|
| Q |
419 |
taagagaagtgagtgtcagcttgttaatgtgcaggaagcattgaatttgaaagagaaggagttgcaaaaacaaactgttaatgtctgcaaaattactgat |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42843396 |
taagagaagtgagtgtcagcttgttaatgtgcaggaagcattgaatttgaaagagaaggagttgcaaaaacaaactgttaatgtctgcaaaattactgat |
42843495 |
T |
|
| Q |
519 |
ttggtgaaacagtgtgaggtagctaatgaaaagctcaagatatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacatgatactc |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42843496 |
ttggtgaaacagtgtgaggtagctaatgaaaagctcaagatatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacatgatactc |
42843595 |
T |
|
| Q |
619 |
gtcaattgcaaagtcagcttgaagcggcacaaaaagatattgctaaattagaattggagttagattcaaggaaaaaagggatgcact |
705 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42843596 |
gtcaattgcaaagtcagcttgaagcagcacaaaacaatattgctaaattagaattggagttagattcaaggaaaaaagggatgcact |
42843682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 50 - 294
Target Start/End: Original strand, 42819106 - 42819350
Alignment:
| Q |
50 |
tttatcgtgggagatagacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctt |
149 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||| ||||||||||||| ||| || || |||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
42819106 |
tttattgtgggagattgacaatagaagttatgataagttgctcaaaaagtgcattgagaacgaggaagagctaagagttaccaatttaaagcttcaactt |
42819205 |
T |
|
| Q |
150 |
tcggaagaagagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtgaggaattgaggctgaaagagaaggagttgc |
249 |
Q |
| |
|
|||||| ||||| ||| || ||||||||||||||||||| || |||||| ||||||| || | ||||| ||||||| |||||||||| | ||| ||| |
|
|
| T |
42819206 |
tcggaaaaagaggttatcaacttgaaggttcaagttgagaacagcaagggtcagtttgataatgtgtgtgaagaattgaagctgaaagaggacgagatgc |
42819305 |
T |
|
| Q |
250 |
ataaacaaaaagagctttcggaagaggagattttcaagttgaaga |
294 |
Q |
| |
|
|||||||||| ||| |||| ||| | ||||||||||||| ||||| |
|
|
| T |
42819306 |
ataaacaaaaggaggtttcagaaaaagagattttcaagtagaaga |
42819350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 66 - 201
Target Start/End: Original strand, 42834318 - 42834453
Alignment:
| Q |
66 |
gacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctttcggaagaagagaata |
165 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||| | || | || |||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
42834318 |
gacaatagaagttatgatgatttgatcaaaaaaattattggaacggaggaagagctaagggttaccaattcaaagcttcgactttcagaagaagagaata |
42834417 |
T |
|
| Q |
166 |
taaagttgaaggttcaagttgagagtagtgagggtc |
201 |
Q |
| |
|
||||||||||||| ||||||| || | ||||||||| |
|
|
| T |
42834418 |
taaagttgaaggtccaagttgggaatggtgagggtc |
42834453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 547 - 677
Target Start/End: Original strand, 42834652 - 42834782
Alignment:
| Q |
547 |
aaaagctcaagatatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacatgatactcgtcaattgcaaagtcagcttgaagcggc |
646 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| ||||| || ||||| ||||||||||||||| |||| |||||||||| |||||||| ||| ||| |
|
|
| T |
42834652 |
aaaagctcaagatatcaaaagtggaaattgaatctttaagaaatgaactgcggagtaagtcacatgaaactcatcaattgcaaggtcagcttaaagtggc |
42834751 |
T |
|
| Q |
647 |
acaaaaagatattgctaaattagaattggag |
677 |
Q |
| |
|
|| || |||| ||||||| |||||||||| |
|
|
| T |
42834752 |
actggaaaatatggctaaatcagaattggag |
42834782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 517 - 686
Target Start/End: Original strand, 42819480 - 42819649
Alignment:
| Q |
517 |
atttggtgaaacagtgtgaggtagctaatgaaaagctcaagatatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacatgatac |
616 |
Q |
| |
|
|||||||| ||||| ||| | |||| ||| |||||||||||||||| |||||||| || | |||||| |||||||| |||||||||| ||| || |
|
|
| T |
42819480 |
atttggtggaacagcttgatgcagctcatgcaaagctcaagatatcaacagatgaaaatgcaattttaagagaggaacttgggagtaagtcatctgagac |
42819579 |
T |
|
| Q |
617 |
tcgtcaattgcaaagtcagcttgaagcggcacaaaaagatattgctaaattagaattggagttagattca |
686 |
Q |
| |
|
| ||||||| || |||||||| ||| |||||| || |||| |||| || | |||||||||||| |||| |
|
|
| T |
42819580 |
ttatcaattggaaggtcagcttaaagtggcacaggaaaatatggctatatcaaaattggagttagtttca |
42819649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 323 - 403
Target Start/End: Original strand, 42819262 - 42819342
Alignment:
| Q |
323 |
tgataatgtgagcaaagaattgaacctgaaagagaaggagttgaataaacaaaaggagcttttaaaagaagagattttcaa |
403 |
Q |
| |
|
|||||||||| | |||||||||| ||||||||| | ||| || |||||||||||||| ||| | || ||||||||||||| |
|
|
| T |
42819262 |
tgataatgtgtgtgaagaattgaagctgaaagaggacgagatgcataaacaaaaggaggtttcagaaaaagagattttcaa |
42819342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 324 - 392
Target Start/End: Original strand, 42834459 - 42834527
Alignment:
| Q |
324 |
gataatgtgagcaaagaattgaacctgaaagagaaggagttgaataaacaaaaggagcttttaaaagaa |
392 |
Q |
| |
|
|||||||||||| |||||||||| || ||| |||| ||||||| |||||||| ||||||||| ||||| |
|
|
| T |
42834459 |
gataatgtgagcgaagaattgaatctaaaaaagaaagagttgaggaaacaaaaagagcttttagaagaa |
42834527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 4e-46; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 21 - 274
Target Start/End: Original strand, 12621768 - 12622024
Alignment:
| Q |
21 |
cagtttgttggggtggaaaacacagatgat---ttatcgtgggagatagacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaag |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| |||||||| ||||||| |||||||||| | |||||||||||||||| ||||| ||||||| |
|
|
| T |
12621768 |
cagtttgttggggtggaaaatacagatgataatttatcatgggagatggacaataaaagttatgatcaattgctcaaaaagttcaaagaaaatgaggaag |
12621867 |
T |
|
| Q |
118 |
agctaagggttaccaatttaaagcttcagctttcggaagaagagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatg |
217 |
Q |
| |
|
||||||| ||| | ||||| || ||||||||||||||| |||||| |||||||||||| ||||||| ||||| ||| |||||| | ||||| | | | |
|
|
| T |
12621868 |
agctaagagtttctaattttaaacttcagctttcggaacaagagattataaagttgaaagttcaagctgagaatagcaagggtcagcttgataaggtgcg |
12621967 |
T |
|
| Q |
218 |
tgaggaattgaggctgaaagagaaggagttgcataaacaaaaagagctttcggaaga |
274 |
Q |
| |
|
||| ||||||| |||||| || | ||| ||||| ||||||||||||||||| |||| |
|
|
| T |
12621968 |
tgaagaattgaagctgaacaaggaagagctgcatgaacaaaaagagctttcgaaaga |
12622024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 21 - 365
Target Start/End: Original strand, 12627652 - 12627993
Alignment:
| Q |
21 |
cagtttgttggggtggaaaacacagatgatttatcgtgggagatagacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagc |
120 |
Q |
| |
|
||||||||||| |||||||| |||||||| | |||||||||| ||||| ||| ||||||| | ||||| |||||||| | |||||||||||||||| |
|
|
| T |
12627652 |
cagtttgttggagtggaaaatacagatgact---cgtgggagatggacaacggaacttatgatgagttgcttaaaaagtttaatgaaaaggaggaagagc |
12627748 |
T |
|
| Q |
121 |
taagggttaccaatttaaagcttcagctttcggaagaagagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtga |
220 |
Q |
| |
|
|||| || ||||||| || ||||| ||||| || |||| | |||||||||||||||| || |||||| |||||||||| | ||||| || | | || |
|
|
| T |
12627749 |
taagaatttccaattttaaacttcaactttcaaaacaagaaactataaagttgaaggttgaaattgagaatagtgagggtgagcttgataatgtgcgcga |
12627848 |
T |
|
| Q |
221 |
ggaattgaggctgaaagagaaggagttgcataaacaaaaagagctttcggaagaggagattttcaagttgaagattcaaatcgagaagagtgagaatcag |
320 |
Q |
| |
|
||| ||| |||||||||| | ||| ||| ||||| |||||||| ||| ||| | ||||||||||| ||||||||||| | ||||| |||| |||| || |
|
|
| T |
12627849 |
agaactgaagctgaaagaggaagaggtgcgtaaactaaaagagcgttcagaacaagagattttcaaattgaagattcaggttgagaaaagtgtgaatgag |
12627948 |
T |
|
| Q |
321 |
catgataatgtgagcaaagaattgaacctgaaagagaaggagttg |
365 |
Q |
| |
|
| | ||||||| | || ||||||| ||||||||| |||||||| |
|
|
| T |
12627949 |
cttcgtaatgtgcgagaacaattgaatctgaaagaggaggagttg |
12627993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 285 - 484
Target Start/End: Original strand, 12627796 - 12627995
Alignment:
| Q |
285 |
aagttgaagattcaaatcgagaagagtgagaatcagcatgataatgtgagcaaagaattgaacctgaaagagaaggagttgaataaacaaaaggagcttt |
384 |
Q |
| |
|
||||||||| || |||| ||||| |||||| | ||| |||||||||| || ||||| |||| ||||||||| | ||| || ||||| ||| |||| || |
|
|
| T |
12627796 |
aagttgaaggttgaaattgagaatagtgagggtgagcttgataatgtgcgcgaagaactgaagctgaaagaggaagaggtgcgtaaactaaaagagcgtt |
12627895 |
T |
|
| Q |
385 |
taaaagaagagattttcaatttgaagattcaatttaagagaagtgagtgtcagcttgttaatgtgcaggaagcattgaatttgaaagagaaggagttgca |
484 |
Q |
| |
|
| || ||||||||||||| ||||||||||| || ||| ||||| | | ||||| |||||||| ||| ||||||| |||||||| |||||||||| |
|
|
| T |
12627896 |
cagaacaagagattttcaaattgaagattcaggttgagaaaagtgtgaatgagcttcgtaatgtgcgagaacaattgaatctgaaagaggaggagttgca |
12627995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 6e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 609 - 706
Target Start/End: Complemental strand, 7364018 - 7363921
Alignment:
| Q |
609 |
catgatactcgtcaattgcaaagtcagcttgaagcggcacaaaaagatattgctaaattagaattggagttagattcaaggaaaaaagggatgcactt |
706 |
Q |
| |
|
|||||||||| || |||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7364018 |
catgatactcatctattgcaaagtcagcttaaagcggcactaaaaaatattgctaaattagaattggagttagattcaaggaaaaaagggatgcactt |
7363921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 69 - 201
Target Start/End: Complemental strand, 30924849 - 30924717
Alignment:
| Q |
69 |
aatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctttcggaagaagagaatataa |
168 |
Q |
| |
|
|||| |||||||||| | ||||| || |||||||| |||| |||||||||||| | ||| ||||||| || ||| ||||||| |||||||||| ||| | |
|
|
| T |
30924849 |
aataaaagttatgatgaattgctgaagaagttcattaaaaacgaggaagagctacgagtttccaatttgaaacttaagctttcagaagaagagattatca |
30924750 |
T |
|
| Q |
169 |
agttgaaggttcaagttgagagtagtgagggtc |
201 |
Q |
| |
|
|||||||| |||| ||||| |||||||||| |
|
|
| T |
30924749 |
agttgaagaatcaaaatgagaaaagtgagggtc |
30924717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 517 - 672
Target Start/End: Complemental strand, 30924602 - 30924447
Alignment:
| Q |
517 |
atttggtgaaacagtgtgaggtagctaatgaaaagctcaagatatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacatgatac |
616 |
Q |
| |
|
|||||||| |||| | ||||||||||||||| | |||||||||||| | |||||| ||| | |||| ||||||||| ||||||| | | ||| || |
|
|
| T |
30924602 |
atttggtggaacaattggaggtagctaatgaacacctcaagatatcaaatgatgaagttgcaagattaagaaaggaacttgagagtaatttagctgagac |
30924503 |
T |
|
| Q |
617 |
tcgtcaattgcaaagtcagcttgaagcggcacaaaaagatattgctaaattagaat |
672 |
Q |
| |
|
||||||||||||| |||||||||| |||||| || || || |||||||||||| |
|
|
| T |
30924502 |
tcgtcaattgcaagaccagcttgaagtggcacaggaaaatgttactaaattagaat |
30924447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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