View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_high_12 (Length: 502)
Name: NF17574_high_12
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 471; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 25387820 - 25387323
Alignment:
| Q |
1 |
ctcaaattaatggttgggattgtttaatagtaattttttattgtgtaatctaaaccgtttgatctcagagtaacggctgagatcatttactgcgttaaaa |
100 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25387820 |
ctcaaattaatggtcgggattgtttaatagtagttttttattgtgtaatctaaaccgtttgatctcagagtaacggctgagatcatttactgcgttaaaa |
25387721 |
T |
|
| Q |
101 |
catgtaggcactgcagagaattcggatcctattctagcccacaaacctgacaccactctttttcgatgcagtgttgcaagtgataattctgtcaaagatg |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25387720 |
catgtaggcactgcagagaat-cggatcctattctagcccacaaacctgacaccactctttttcgatgcagtgttgcaagtgataattctgtcaaagatg |
25387622 |
T |
|
| Q |
201 |
tggagttcaaaagtatacagcaagagacaaccacatttatttggttgtgaagatcaaagtagtcaagaccatacgaaaaaatttcatgatagagtgaaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25387621 |
tggagttcaaaagtatacagcaagagacaaccacatttatttggttgtgaagatcaaagtagtcaagaccatacgaaaaaatttcatgatagagtgaaga |
25387522 |
T |
|
| Q |
301 |
gtaataattttgtgataagggaggttccgatacagaaattattcaacgtagacaattgtacagataattcttccagcgacttgtcggatttcatcaaaag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25387521 |
gtaataattttgtgataagggaggttccgatacagaaattattcaacgtagacaattgtacagataattcttccagcgacttgtcggatttcatcaaaag |
25387422 |
T |
|
| Q |
401 |
caataatttttcttctacaagcatgaatggcctagattacaatatgcccgagctggttgtttttattcaagaggatcaacaacaatatgtaaaggacat |
499 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25387421 |
caataatttttcttctacaagcatgaatgtcctagactacaatatgcctgagctggttgtttttattcaagaggatcaacaacaatatgtaaaggacat |
25387323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 126 - 286
Target Start/End: Complemental strand, 37650396 - 37650239
Alignment:
| Q |
126 |
atcctattctagcccacaaacctgacaccactctttttcgatgcagtgttgcaagtgataattctgtcaaagatgtggagttcaaaagtatacagcaaga |
225 |
Q |
| |
|
|||| ||||||||| ||||||| ||||||||||||||||||||||| | || |||||||||||||| ||| ||||| ||||||||||| ||||||| |
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| T |
37650396 |
atcccattctagcctacaaaccagacaccactctttttcgatgcagagag--aaatgataattctgtcataga-gtggaattcaaaagtatgcagcaagg |
37650300 |
T |
|
| Q |
226 |
gacaaccacatttatttggttgtgaagatcaaagtagtcaagaccatacgaaaaaatttca |
286 |
Q |
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||| |||||||||| |||||||||||||||||||||| |||||| |||||| ||||| |
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|
| T |
37650299 |
aacatacacatttattccattgtgaagatcaaagtagtcaaaaccataagaaaaattttca |
37650239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 413 - 496
Target Start/End: Complemental strand, 37650162 - 37650079
Alignment:
| Q |
413 |
ttctacaagcatgaatggcctagattacaatatgcccgagctggttgtttttattcaagaggatcaacaacaatatgtaaagga |
496 |
Q |
| |
|
||||||||||||||||| | |||| ||| ||||||| || |||||||| ||||||| |||||||| || |||||||| ||||| |
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| T |
37650162 |
ttctacaagcatgaatgccatagactacgatatgcctgaaatggttgttcttattcacgaggatcagcagcaatatgtcaagga |
37650079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 22354157 - 22354111
Alignment:
| Q |
178 |
aagtgataattctgtcaaagatgtggagttcaaaagtatacagcaaga |
225 |
Q |
| |
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||||||||||||||||| |||| |||||||||||||||| |||||||| |
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|
| T |
22354157 |
aagtgataattctgtcatagat-tggagttcaaaagtatgcagcaaga |
22354111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 26071586 - 26071632
Alignment:
| Q |
178 |
aagtgataattctgtcaaagatgtggagttcaaaagtatacagcaaga |
225 |
Q |
| |
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||||||||||||||||| |||| |||||||||||||||| |||||||| |
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| T |
26071586 |
aagtgataattctgtcatagat-tggagttcaaaagtatgcagcaaga |
26071632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 44270374 - 44270420
Alignment:
| Q |
178 |
aagtgataattctgtcaaagatgtggagttcaaaagtatacagcaaga |
225 |
Q |
| |
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||||||||||||||||| |||| |||||||||||||||| |||||||| |
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| T |
44270374 |
aagtgataattctgtcatagat-tggagttcaaaagtatgcagcaaga |
44270420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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