View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_high_16 (Length: 450)
Name: NF17574_high_16
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_high_16 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 29467894 - 29468343
Alignment:
| Q |
1 |
ctgtcacatccggagaaattaatacttgcgaatgccttcaccaaattgtctcctgataacatcgtcaaggcattggagatggttaaagagagcaatccga |
100 |
Q |
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| T |
29467894 |
ctgtcacatccggagaaattaatacttgcgaatgccttcaccaaattgtctcctgataacatcgtcaaggcattggagatagttaaagagagcaatccaa |
29467993 |
T |
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| Q |
101 |
atttcaaagatcgtattgatatggtgacccttgatcttgattctcaggtttgtcatattatctattgatactgaattactgatgttatttgctttcattc |
200 |
Q |
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| T |
29467994 |
atttcaaagatcgtattgatatggtgacccttgaccttgattctcaggtttgtcatattatatattgatactgaattactgatgttgtttgctttcatta |
29468093 |
T |
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| Q |
201 |
attttctaattttgtttgtcttatcttatctataaaagttttgattttgtttagcaagtgttatttagctacttactaatttcattagcatattatacta |
300 |
Q |
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| T |
29468094 |
attttttaattttgtttgtcttatcttatctataaaagttttgattttgtttagcaagtgttatttagctacttactaatttcattagcatattatacta |
29468193 |
T |
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| Q |
301 |
cagagcgactacacattgtttagattgcatatgtttgttaaaaacacactagaagttcaagaaggaacaagcgttattaatcatgaagacaacatcgagg |
400 |
Q |
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| T |
29468194 |
cagagcgactacacattgtttagattgcatatgtttgttaaaaacacactagaagttcaagaaggaacaagcgttattaatcatgaagacaacatcgagg |
29468293 |
T |
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| Q |
401 |
aaatgaaaaacaatgccaaaaagaggcgaattgtgtgattctcttgccga |
450 |
Q |
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| T |
29468294 |
aaatgaaaaacaatgccaaaaagaggagaattgtgtgattctcttgccga |
29468343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 4e-73; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 9 - 448
Target Start/End: Original strand, 14999056 - 14999488
Alignment:
| Q |
9 |
tccggagaaattaatacttgcgaatgccttcaccaaattgtctcctgataacatcgtcaaggcattggagatggttaaagagagcaatccgaatttcaaa |
108 |
Q |
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| T |
14999056 |
tccggagaaatcaatgcttgcaaatgccttcaacaatttgtctctagagaatcgcgtcaaggcattagcggtagttagagagaccaatccagattttgat |
14999155 |
T |
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| Q |
109 |
gatcgtattgatatggtgacccttgatcttgattctcaggtttgtcatattatctattgatactgaattactgatgttatttgctttcattcattttcta |
208 |
Q |
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| T |
14999156 |
gatagtgttgatacggtgatgcttaactttgattctcaggtttgtcatattatcta-------------actaatgttattttctttcatgcattttcta |
14999242 |
T |
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| Q |
209 |
attttgtttgtcttatcttatctataaaagttttgattttgtttagcaagtgttatttagctacttactaatttcattagcatattatac-tacagagcg |
307 |
Q |
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| T |
14999243 |
attttctttgtcttatctgatctataaa-gttttgactttgtttagcaagtgttatttatctcctcactaatttaattagcataatatatatacagagcg |
14999341 |
T |
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| Q |
308 |
actacacattgtttagattgcatatgtttgttaaaaacacactagaagttcaagaaggaacaagcgttattaatcatgaagacaacat------cgagga |
401 |
Q |
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| T |
14999342 |
actacacaatgttgagattgtatatgtttgtcaaagacacgctagaagttcaagaaggaacaagcgctattgatcatgaagacaacattgaggccgagga |
14999441 |
T |
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| Q |
402 |
aatgaaaaacaatgccaaaaagaggcgaattgtgtgattctcttgcc |
448 |
Q |
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| T |
14999442 |
aacgaaaaacaatgacaaaaagaggaaaattatgtgattctcatgcc |
14999488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 14741618 - 14741475
Alignment:
| Q |
24 |
acttgcgaatgccttcaccaaattgtctcctgataacatcgtcaaggcattggagatggttaaagagagcaatccgaatttcaaagatcgtattgatatg |
123 |
Q |
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| T |
14741618 |
acttgcgaatgccatccccaagttgtctcctgataacctccttaaggcattagagattgttaaagagaataatccaaatttccaacatagtattgatatg |
14741519 |
T |
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| Q |
124 |
gtgacccttgatcttgattctcaggtttgtcatattatctattg |
167 |
Q |
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| T |
14741518 |
gtgacccttaaccttgaagctgaggtttgtcatgttacctattg |
14741475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 334 - 445
Target Start/End: Original strand, 13636866 - 13636977
Alignment:
| Q |
334 |
tttgttaaaaacacactagaagttcaagaaggaacaagcgttattaatcatgaagacaacatcgaggaaatgaaaaacaatgccaaaaagaggcgaattg |
433 |
Q |
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| T |
13636866 |
tttgttaaaaactcactagaagttcaagaaggaataagcgttgttactcatgaagacaacactgaggaaaaggaaaacaattcataaaagagtaaaattg |
13636965 |
T |
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| Q |
434 |
tgtgattctctt |
445 |
Q |
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| T |
13636966 |
tgtgattctctt |
13636977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 301 - 400
Target Start/End: Complemental strand, 14741363 - 14741264
Alignment:
| Q |
301 |
cagagcgactacacattgtttagattgcatatgtttgttaaaaacacactagaagttcaagaaggaacaagcgttattaatcatgaagacaacatcgagg |
400 |
Q |
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| T |
14741363 |
cagagcgactacacagtatggagattgtatatgtttgttaaaaattcactagaagttcaagaaggaacaagcgttgctactcatgaagacaacattgagg |
14741264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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