View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_high_17 (Length: 449)
Name: NF17574_high_17
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_high_17 |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 15 - 430
Target Start/End: Complemental strand, 34291397 - 34290981
Alignment:
| Q |
15 |
aaaatcccatgatcttgttgtgtgtagcttgcggtacttatttgaaagtactgagagaacttcattcatggctacacatacaaaaaagattaacaaatga |
114 |
Q |
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| T |
34291397 |
aaaatcccatgatcttgttgtgtgtagcttgcggtacttatttgaaagtactgagagaacttcattcatggctacacatacaaaaaagattaacaaatga |
34291298 |
T |
|
| Q |
115 |
ctaaatatatacaatttgaacagatatgaagggactagtagtagagaaaaatgatatcatgccagataacttgtttgcttcatcctcagacagtttagca |
214 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34291297 |
ctaaatataaacaatttgaacagatatgaagggactagtagtagaaaaaaatgatatcatgccagataacttgtttgcttcatcctcagacagtttagca |
34291198 |
T |
|
| Q |
215 |
gcaaatgcattaaagctctttgtgtagctgtatactatggattctttggcttcaacatggctgccaagtaaacaaagattaagaaacaatagaacagaaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34291197 |
gcaaatgcattaaagctctttgtgtagctgtatactatggattctttggcttcaacatggctgccaagtaaacaaagattaagaaacaatagaacagaaa |
34291098 |
T |
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| Q |
315 |
t-aaatcagaataaccaaattaatttctctcagatggcattgtgataataatgcctttaattttgaaactataggcctatttcgattgacttgtttgagt |
413 |
Q |
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| T |
34291097 |
tgaaatcagaataaccaaattaatttctctcagatggcattgtgataataatgcctttaattttgaaactagaggcctatttcgattgacttgtttgagt |
34290998 |
T |
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| Q |
414 |
tcatctactgacataaa |
430 |
Q |
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| T |
34290997 |
tcatctactgacataaa |
34290981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 171 - 296
Target Start/End: Original strand, 12728856 - 12728981
Alignment:
| Q |
171 |
tcatgccagataacttgtttgcttcatcctcagacagtttagcagcaaatgcattaaagctctttgtgtagctgtatactatggattctttggcttcaac |
270 |
Q |
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|||||| |||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12728856 |
tcatgctagataacttgttggcttcatcctcggatagtttagcagcaaatgcattaaagctctttgtgtagctgtatactatggactctttggcttcaac |
12728955 |
T |
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| Q |
271 |
atggctgccaagtaaacaaagattaa |
296 |
Q |
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| T |
12728956 |
gtggctgctaagtaaacaaagattaa |
12728981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 12728795 - 12728860
Alignment:
| Q |
19 |
tcccatgatcttgttgtgtgtagcttgcggtacttatttgaaagtactgagagaacttcattcatg |
84 |
Q |
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| T |
12728795 |
tcccatgatcttgttgtgtgtagcttgcggtattgattcggaattactgaaagcacttcattcatg |
12728860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 176 - 268
Target Start/End: Complemental strand, 28519048 - 28518956
Alignment:
| Q |
176 |
ccagataacttgtttgcttcatcctcagacagtttagcagcaaatgcattaaagctctttgtgtagctgtatactatggattctttggcttca |
268 |
Q |
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||||||||||| || ||||||| || |||||||| |||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||| |
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| T |
28519048 |
ccagataacttattgacttcatcttctgacagttttgcagcaaatgcattgaagctctttgtgtagctatatacaatggactctttggcttca |
28518956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 431
Target Start/End: Original strand, 9689 - 9737
Alignment:
| Q |
383 |
tataggcctatttcgattgacttgtttgagttcatctactgacataaat |
431 |
Q |
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| T |
9689 |
tataggcctatttagattgatttatttgagtttatctactaacataaat |
9737 |
T |
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