View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_high_24 (Length: 406)
Name: NF17574_high_24
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 3 - 390
Target Start/End: Original strand, 23325136 - 23325523
Alignment:
| Q |
3 |
cacagaaaacagatatacagttaaattagtgatgactaggcgaaaaaattatgactttgttcaaaacannnnnnnactgtgtcaagctacaaatatgtaa |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
23325136 |
cacagaaaacagatatacagttaaattagtgatgactaggcgaaaaaattatgactttgttcaaaacatttttttactgtgtaaagctacaaatatgtaa |
23325235 |
T |
|
| Q |
103 |
cctgatattgtgactgagaattaacaccgttgctccttcctttgtctacccctgcaatttgcaccaaaagaaaaataactttgtgttagacaaggtgaat |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23325236 |
cctgatattgtgactgagaattaacaccgttgctccttcctttgtctacccctgcaatttgcaccaaaagaaaaataactttgtgttagacaaggtgaat |
23325335 |
T |
|
| Q |
203 |
ctgaaggatacattcaaattcagtttcatattcgttatattgatgttttgtaataatgatgaaaatatggtggtttatatttcaagtttctgttataaac |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23325336 |
ctgaaggatacattcaaattcagtttcatattcgttatattgatgttttgtaataatgatgaaaatatggtggtttatatttcaagtttctgttagaaac |
23325435 |
T |
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| Q |
303 |
tcgatttggtgaaatcaaaacatgaacatgataatgactgtggtaactgcaagaatcttttacaacgcgaaatcggaattcacatgac |
390 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23325436 |
tcgatttggtaaaatcaaaacatgaacatgataatgactgtggtaactgcaagaatcttttacaacgcgaaatcggaattcacatgac |
23325523 |
T |
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