View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_high_25 (Length: 367)
Name: NF17574_high_25
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 39501357 - 39501717
Alignment:
| Q |
1 |
ctcattgtttgtgaagagatatgcagccaaaggctttggccttgattttattatactaaagctatcttcaatgctgtctacctgcaaaagtgtgaggaaa |
100 |
Q |
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| T |
39501357 |
ctcattgtttgtgaagagatatgcagccaaaggctttggccttgattgtattatactaaagctatcttcaatgctgtctacctgcaaaagtgtgaggaaa |
39501456 |
T |
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| Q |
101 |
agattcaaagacttagatttatgcgaaatataaaaaacataacatttacttttccctttatggtactcacagtaataattggcaaaatcggcccaaatat |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39501457 |
agatacaaagacttagatttatgcgaaatataaaaaacataacatttacttttccctttatggtactcacagtaataattggcaaaatcggcccaaatat |
39501556 |
T |
|
| Q |
201 |
ctcctcttgcataaccatagcttcttgtggaacatccaataagatagttggcgcaatctttctgcaataaagagggagaattgatgttatggtattgtta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39501557 |
ctcctcttgcataaccatagcttcttgtggaacatccaataagatagttggcgcaatctttctgcaataaagagggagaattgatgttatggtattgtta |
39501656 |
T |
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| Q |
301 |
caaatgattaattccaatctttataaccaagatggaaatgcaaactcacaatttcttctca |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39501657 |
caaatgattaattccaatctttataaccaagatggaaatgcaaactcacaatttcttctca |
39501717 |
T |
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