View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_high_27 (Length: 363)
Name: NF17574_high_27
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 15314055 - 15313821
Alignment:
| Q |
18 |
aatctagttgatatcattacaaatagagcagcaacccaacattgttcacagtatcatcaaaacactcatagaataaacaaaatatatagtcccaatcaca |
117 |
Q |
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| T |
15314055 |
aatctagttgatatcattacaaatagagcagcaacccaacattgttgacagtagcatcaaaacactcatagaataaacaaaatctatagtccaaatcaca |
15313956 |
T |
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| Q |
118 |
acaaatcctatttctcattcctaattcaaatgtccatttatattctcatcaagtttaccaaaaattgaagnnnnnnnncctaacaataaatacttaaatt |
217 |
Q |
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| T |
15313955 |
acaaatcctatttctcattcctaattcaaatgtccatttatattctcatcaagtttaccaaaaaatgaagaaaaaaaacctaacaataaatacttaaatt |
15313856 |
T |
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| Q |
218 |
aaatctgacaataaaccctgaaatctaaaacatac |
252 |
Q |
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| T |
15313855 |
aaatctgacaataaaccctgaaatctaaaacatac |
15313821 |
T |
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