View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17574_high_43 (Length: 310)

Name: NF17574_high_43
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17574_high_43
NF17574_high_43
[»] chr3 (1 HSPs)
chr3 (1-292)||(24777974-24778265)


Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 24777974 - 24778265
Alignment:
Q  1 acagatgaataaaagtgattaccagtgtcaccaatgctactaagatctttgcaaatcctagcaaactcagcagatggcatcctaacaatggcatcatatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24777974 acagatgaataaaagtgattaccagtgtcaccaatgctactaagatctttgcaaatcctagcaaactcagcagatggcatcctaacaatggcatcatatt 24778073  T
Q  101 cagcctctggaattccaaggtgctcactatcaatgtccatcagcttcatctcaaaatcagaaatcttgtcttgggcttcatcacataaccacnnnnnnnn 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  24778074 cagcctctggaattccaaggtgctcactatcaatgtccatcagcttcatctcaaaatcagaaatcttgtcttgggcttcatcacataaccacaaaaaaaa 24778173  T
Q  201 caagtcaggaaattacactattaataacatatgaaccgcaatggctacccaataaatcacaagtgataccaccacaaatatgataccaaaac 292  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24778174 caagccaggaaattacactattattaacatatgaaccgcaatggctacctaataaatcacaagtgataccaccacaaatatgataccaaaac 24778265  T

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