View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_high_44 (Length: 306)
Name: NF17574_high_44
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_high_44 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 33193940 - 33194228
Alignment:
| Q |
1 |
ccatcatctatcttcaacgaggccccttctctaacaagtaaagaagcaatccgatcgtgtccattcttaactgcttcaagtagcggtgtgttcccaaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33193940 |
ccatcatctatcttcaacgaggccccttctctaacaagtaaagaagcaatccgatcgtgtccattcttaactgcttcaagtagcggtgtgttcccaaagt |
33194039 |
T |
|
| Q |
101 |
tatctgtgaaataccacattagtgatgtttgcattacctaaaatttaagtttgatcctcgaggaatatctataggttgctcaattacctttgacgttcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33194040 |
tatctgtgaaataccacattagtgatgtttgcattacctaaaatttaagtttgatcctcgaggaatatctataggttgctcaattacctttgacgttcat |
33194139 |
T |
|
| Q |
201 |
gtctacacgttcatgaataagaagaagtgtgatatcttcatatcctctgcatgcagcaagatgctataggaaaaacaacaaaggttctt |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33194140 |
gtctacacgttcatgaataagaagaagtgtgatatcttcatatcctctgcatgcagcaagatgctataggaaaaacaacaaaggttctt |
33194228 |
T |
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