View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17574_high_55 (Length: 263)

Name: NF17574_high_55
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17574_high_55
NF17574_high_55
[»] chr8 (2 HSPs)
chr8 (1-239)||(26901328-26901566)
chr8 (157-236)||(26901484-26901563)
[»] chr7 (2 HSPs)
chr7 (157-238)||(32910611-32910692)
chr7 (157-214)||(35880146-35880203)
[»] chr6 (3 HSPs)
chr6 (157-237)||(2511407-2511487)
chr6 (157-238)||(2511408-2511489)
chr6 (157-220)||(721960-722023)
[»] chr2 (3 HSPs)
chr2 (157-214)||(4931585-4931642)
chr2 (179-238)||(4931585-4931644)
chr2 (159-213)||(37300011-37300065)
[»] chr4 (3 HSPs)
chr4 (159-235)||(45121151-45121227)
chr4 (158-234)||(45121151-45121227)
chr4 (171-236)||(1040649-1040713)
[»] chr5 (2 HSPs)
chr5 (156-235)||(8610328-8610407)
chr5 (170-214)||(6965342-6965386)
[»] scaffold0024 (1 HSPs)
scaffold0024 (171-220)||(132627-132676)
[»] chr1 (2 HSPs)
chr1 (171-220)||(46170409-46170458)
chr1 (155-191)||(40179887-40179923)
[»] chr3 (2 HSPs)
chr3 (157-197)||(28290454-28290494)
chr3 (157-197)||(28290487-28290527)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 26901328 - 26901566
Alignment:
Q  1 ctctcactggaatattgtcaacaacgaatctacaaaggccaaaataaaaagtctatcaggtgtcagttcaacggtaaaaatttgatccagtaatattaac 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26901328 ctctcactggaatattgtcaacaaagaatctacaaaggccaaaataaaaagtctatcaggtgtcagttcaacggtaaaaatttgatccagtaatattaac 26901427  T
Q  101 gtataaaatttaaatctcttatgagatgattataaaatgatcatactcctatgtggtcttaaatatatacaaaaagtcaaatgtatttgatttaaatttg 200  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  26901428 gtataaactttaaatctcttatgagatgattataaaatgatcatactcctctctggtcttaaatatatacaaaaagtcaaatgtatttgatttaaatttg 26901527  T
Q  201 aacaaaatacatttaactttgtgcatatatttaagatca 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26901528 aacaaaatacatttaactttgtgcatatatttaagatca 26901566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 26901563 - 26901484
Alignment:
Q  157 tcttaaatatatacaaaaagtcaaatgtatttgatttaaatttgaacaaaatacatttaactttgtgcatatatttaaga 236  Q
    |||||||||||| || ||||| ||||||||||  || |||||| ||  |||||||||| ||||| || ||||||||||||    
T  26901563 tcttaaatatatgcacaaagttaaatgtattttgttcaaatttaaatcaaatacatttgactttttgtatatatttaaga 26901484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 32910692 - 32910611
Alignment:
Q  157 tcttaaatatatacaaaaagtcaaatgtatttgatttaaatttgaacaaaatacatttaactttgtgcatatatttaagatc 238  Q
    |||||||||||  ||||||||||||| ||||||||||||||||| || |||||||||| ||||| |   |||||||||||||    
T  32910692 tcttaaatataatcaaaaagtcaaatatatttgatttaaatttggaccaaatacatttgacttttttattatatttaagatc 32910611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 35880146 - 35880203
Alignment:
Q  157 tcttaaatatatacaaaaagtcaaatgtatttgatttaaatttgaacaaaatacattt 214  Q
    ||||||||||| ||||||||||||||   ||||||||||||||| || ||||| ||||    
T  35880146 tcttaaatataaacaaaaagtcaaatacgtttgatttaaatttggaccaaatatattt 35880203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 2511487 - 2511407
Alignment:
Q  157 tcttaaatatatacaaaaagtcaaatgtatttgatttaaatttgaacaaaatacatttaactttgtgcatatatttaagat 237  Q
    |||||||| || ||||||||||||||||||||||| ||||||| || |||| |||||| || || || |||||||||||||    
T  2511487 tcttaaatctaaacaaaaagtcaaatgtatttgatctaaatttaaataaaaaacatttgaccttttgtatatatttaagat 2511407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 238
Target Start/End: Original strand, 2511408 - 2511489
Alignment:
Q  157 tcttaaatatatacaaaaagtcaaatgtatttgatttaaatttgaacaaaatacatttaactttgtgcatatatttaagatc 238  Q
    |||||||||||||||||| ||||||||| ||| ||||||||||  |  |||||||||| ||||| ||  || ||||||||||    
T  2511408 tcttaaatatatacaaaaggtcaaatgttttttatttaaatttagatcaaatacatttgactttttgtttagatttaagatc 2511489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 722023 - 721960
Alignment:
Q  157 tcttaaatatatacaaaaagtcaaatgtatttgatttaaatttgaacaaaatacatttaacttt 220  Q
    |||||||| || ||||||||||||   ||| ||||| |||||||||| ||||||||||||||||    
T  722023 tcttaaatttaaacaaaaagtcaaccatatctgattcaaatttgaaccaaatacatttaacttt 721960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 4931642 - 4931585
Alignment:
Q  157 tcttaaatatatacaaaaagtcaaatgtatttgatttaaatttgaacaaaatacattt 214  Q
    ||||||||||| |||||||||||||||||||||||| |||||| ||  ||||||||||    
T  4931642 tcttaaatataaacaaaaagtcaaatgtatttgattcaaatttaaatcaaatacattt 4931585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 4931585 - 4931644
Alignment:
Q  179 aaatgtatttgatttaaatttgaacaaaatacatttaactttgtgcatatatttaagatc 238  Q
    ||||||||||||||||||||||||  |||||||||| ||||| ||  |||||||||||||    
T  4931585 aaatgtatttgatttaaatttgaatcaaatacatttgactttttgtttatatttaagatc 4931644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 37300065 - 37300011
Alignment:
Q  159 ttaaatatatacaaaaagtcaaatgtatttgatttaaatttgaacaaaatacatt 213  Q
    ||||||||| | ||||||||||||||||||| || |||||| ||| |||||||||    
T  37300065 ttaaatataaataaaaagtcaaatgtatttggttcaaatttcaactaaatacatt 37300011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 45121151 - 45121227
Alignment:
Q  159 ttaaatatatacaaaaagtcaaatgtatttgatttaaatttgaacaaaatacatttaactttgtgcatatatttaag 235  Q
    |||||| ||| |||||| | |||||||||||||||||||||| || |||||||||| ||||| ||  ||||||||||    
T  45121151 ttaaatctatgcaaaaatttaaatgtatttgatttaaatttggactaaatacatttgactttttgtttatatttaag 45121227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 45121227 - 45121151
Alignment:
Q  158 cttaaatatatacaaaaagtcaaatgtatttgatttaaatttgaacaaaatacatttaactttgtgcatatatttaa 234  Q
    |||||||||| ||||||||||||||||||||  |  |||||| ||  |||||||||||| ||| |||||| ||||||    
T  45121227 cttaaatataaacaaaaagtcaaatgtatttagtccaaatttaaatcaaatacatttaaatttttgcatagatttaa 45121151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 1040713 - 1040649
Alignment:
Q  171 aaaaagtcaaatgtatttgatttaaatttgaacaaaatacatttaactttgtgcatatatttaaga 236  Q
    ||||| |||||||||||||||  ||| |||||| |||| |||||||||||| || |||||||||||    
T  1040713 aaaaaatcaaatgtatttgatcgaaaattgaaccaaatgcatttaactttg-gcttatatttaaga 1040649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 8610328 - 8610407
Alignment:
Q  156 gtcttaaatatatacaaaaagtcaaatgtatttgatttaaatttgaacaaaatacatttaactttgtgcatatatttaag 235  Q
    |||||||||||| ||||||||||||||| |||| || |||||||  || ||||||||||  |||| ||| ||||||||||    
T  8610328 gtcttaaatatacacaaaaagtcaaatggatttaatctaaatttataccaaatacatttgtctttttgcttatatttaag 8610407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 6965342 - 6965386
Alignment:
Q  170 caaaaagtcaaatgtatttgatttaaatttgaacaaaatacattt 214  Q
    ||||||||||||||||||| ||| ||||||| || ||||||||||    
T  6965342 caaaaagtcaaatgtatttaattcaaatttggaccaaatacattt 6965386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 132676 - 132627
Alignment:
Q  171 aaaaagtcaaatgtatttgatttaaatttgaacaaaatacatttaacttt 220  Q
    ||||||||||||||||||| |||||| ||| || |||||||||| |||||    
T  132676 aaaaagtcaaatgtatttggtttaaagttggaccaaatacatttgacttt 132627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 46170409 - 46170458
Alignment:
Q  171 aaaaagtcaaatgtatttgatttaaatttgaacaaaatacatttaacttt 220  Q
    |||||||||||||||||| || |||||||| || |||||||||| |||||    
T  46170409 aaaaagtcaaatgtatttaatctaaatttggaccaaatacattttacttt 46170458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 40179923 - 40179887
Alignment:
Q  155 ggtcttaaatatatacaaaaagtcaaatgtatttgat 191  Q
    |||||||||||||  ||||||||||||||||||||||    
T  40179923 ggtcttaaatataagcaaaaagtcaaatgtatttgat 40179887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 28290454 - 28290494
Alignment:
Q  157 tcttaaatatatacaaaaagtcaaatgtatttgatttaaat 197  Q
    |||| |||||| |||||||||||||||||| ||||||||||    
T  28290454 tcttgaatataaacaaaaagtcaaatgtatctgatttaaat 28290494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 28290527 - 28290487
Alignment:
Q  157 tcttaaatatatacaaaaagtcaaatgtatttgatttaaat 197  Q
    ||||||||||| | ||||| |||||||||||||||||||||    
T  28290527 tcttaaatataaataaaaaatcaaatgtatttgatttaaat 28290487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University