View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17574_high_67 (Length: 243)

Name: NF17574_high_67
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17574_high_67
NF17574_high_67
[»] chr4 (12 HSPs)
chr4 (15-188)||(19631202-19631367)
chr4 (180-240)||(19630703-19630762)
chr4 (15-75)||(50033019-50033079)
chr4 (182-241)||(19684037-19684095)
chr4 (15-75)||(50035538-50035598)
chr4 (15-75)||(51737155-51737215)
chr4 (15-74)||(19525916-19525975)
chr4 (15-59)||(19731367-19731411)
chr4 (15-74)||(6923142-6923201)
chr4 (13-55)||(23255954-23255996)
chr4 (15-59)||(14958023-14958067)
chr4 (15-59)||(55014277-55014321)
[»] chr3 (8 HSPs)
chr3 (15-75)||(3547622-3547682)
chr3 (15-74)||(52550818-52550877)
chr3 (15-74)||(36665019-36665078)
chr3 (15-77)||(28690513-28690575)
chr3 (15-59)||(9145517-9145561)
chr3 (15-55)||(15503044-15503084)
chr3 (15-74)||(10435134-10435193)
chr3 (15-55)||(46483570-46483610)
[»] chr6 (3 HSPs)
chr6 (15-74)||(13207155-13207214)
chr6 (13-75)||(19068968-19069030)
chr6 (15-55)||(30237184-30237224)
[»] chr8 (4 HSPs)
chr8 (15-75)||(44123672-44123732)
chr8 (15-69)||(886269-886323)
chr8 (13-74)||(11854524-11854585)
chr8 (37-69)||(9302577-9302609)
[»] chr1 (10 HSPs)
chr1 (15-74)||(16751655-16751714)
chr1 (15-68)||(38738180-38738233)
chr1 (15-75)||(50481277-50481337)
chr1 (15-77)||(23330449-23330511)
chr1 (15-68)||(47222220-47222273)
chr1 (15-79)||(32565741-32565805)
chr1 (15-74)||(3898773-3898832)
chr1 (15-68)||(14075741-14075794)
chr1 (15-68)||(16266168-16266221)
chr1 (15-55)||(4605017-4605057)
[»] scaffold0111 (1 HSPs)
scaffold0111 (15-68)||(38562-38615)
[»] chr5 (10 HSPs)
chr5 (15-76)||(42421683-42421744)
chr5 (13-77)||(35290283-35290347)
chr5 (15-74)||(16048083-16048142)
chr5 (16-59)||(19087973-19088016)
chr5 (15-65)||(25563509-25563559)
chr5 (15-68)||(43067235-43067288)
chr5 (15-55)||(14475436-14475476)
chr5 (15-59)||(19889669-19889713)
chr5 (15-55)||(30779947-30779987)
chr5 (15-55)||(37843777-37843817)
[»] chr2 (6 HSPs)
chr2 (15-76)||(32776102-32776163)
chr2 (15-74)||(332278-332335)
chr2 (15-74)||(40598128-40598187)
chr2 (15-52)||(41463719-41463756)
chr2 (15-59)||(38137732-38137776)
chr2 (15-71)||(40898643-40898699)
[»] chr7 (4 HSPs)
chr7 (15-75)||(33613215-33613275)
chr7 (15-74)||(34478213-34478272)
chr7 (15-74)||(37231766-37231825)
chr7 (15-65)||(36643171-36643221)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 19631367 - 19631202
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagagagtataata-ttcctcacttcatcacgaaagtgaattgttcact 113  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||    
T  19631367 atatgcattggtacgtgtgtcggagtcaattaagtcatctaatataggacggagagagtataatattttctcacttcatcacgaaagtgagttgttcact 19631268  T
Q  114 taagatgagtcagatgagtctcattcaatttattgataaaaatcaaatattaatttattttaaagatttaatcta 188  Q
    ||         ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19631267 ta---------agatgagtctcattcaattgattgataaaaatcaaatattaatttattttaaagatttaatcta 19631202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 19630762 - 19630703
Alignment:
Q  180 tttaatctaatcattaagattttcattattgtgacatttgcagggatgatcaaatattgtt 240  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19630762 tttaatctaataattaagattttcattat-gtgacatttgcagggatgatcaaatattgtt 19630703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 50033079 - 50033019
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagagagtat 75  Q
    |||||||||||||||| |||||||||||| || |||||||||||| |||||||||||||||    
T  50033079 atatgcattggtacgtgtgtcggagtcaactaagtcatctaatatgggacggagagagtat 50033019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 19684037 - 19684095
Alignment:
Q  182 taatctaatcattaagattttcattattgtgacatttgcagggatgatcaaatattgttc 241  Q
    ||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  19684037 taatctaattattaagattttcattgt-gtgacatttgcagggatgatcaaatattgttc 19684095  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 50035598 - 50035538
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagagagtat 75  Q
    |||||||||| ||||| |||||||||||| ||| ||||||||||| |||||||||||||||    
T  50035598 atatgcattgatacgtgtgtcggagtcaactagatcatctaatatgggacggagagagtat 50035538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 51737155 - 51737215
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagagagtat 75  Q
    |||||||||||||||| ||||||||||||  |||| ||||||||| |||||||||||||||    
T  51737155 atatgcattggtacgtgtgtcggagtcaacaaggttatctaatatgggacggagagagtat 51737215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 19525916 - 19525975
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagagagta 74  Q
    |||||||||||||||| ||||| |||||| |||||||| ||||||||||||||| |||||    
T  19525916 atatgcattggtacgtgtgtcgaagtcaactaggtcatttaatataggacggagggagta 19525975  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 19731367 - 19731411
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatat 59  Q
    |||||||||||||||| |||||||||||| |||||||||||||||    
T  19731367 atatgcattggtacgtgtgtcggagtcaactaggtcatctaatat 19731411  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 6923142 - 6923201
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagagagta 74  Q
    |||||||||||||||| ||||| |||||| ||| |||| ||||||| ||||||| |||||    
T  6923142 atatgcattggtacgtgtgtcgaagtcaactagatcatttaatataagacggagggagta 6923201  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 23255996 - 23255954
Alignment:
Q  13 atatatgcattggtacgtatgtcggagtcaattaggtcatcta 55  Q
    |||||||||||||||||| |||| ||||||| |||||||||||    
T  23255996 atatatgcattggtacgtgtgtcagagtcaactaggtcatcta 23255954  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 14958067 - 14958023
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatat 59  Q
    ||||||||||||| || |||| ||||||| |||||||||||||||    
T  14958067 atatgcattggtatgtgtgtcagagtcaactaggtcatctaatat 14958023  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 55014321 - 55014277
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatat 59  Q
    ||||||||| |||||| |||||||||||| ||||| |||||||||    
T  55014321 atatgcattagtacgtgtgtcggagtcaactaggttatctaatat 55014277  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 3547622 - 3547682
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagagagtat 75  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||    
T  3547622 atatgcattggtacgtgtgtcggagtcaattaggtcatctaatatgggacggagggagtat 3547682  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 52550818 - 52550877
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagagagta 74  Q
    ||||||||| ||||||||||||||||||| || |||||||||||| ||||||||||||||    
T  52550818 atatgcattagtacgtatgtcggagtcaactaagtcatctaatatgggacggagagagta 52550877  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 36665078 - 36665019
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagagagta 74  Q
    |||||||||||||||| | ||||||||||||| |||||||||||||  ||||||||||||    
T  36665078 atatgcattggtacgtgtatcggagtcaattaagtcatctaatataaaacggagagagta 36665019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 28690575 - 28690513
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagagagtataa 77  Q
    ||||||||||||| || |||||||||||| |||||||||||||||  ||||||| ||||||||    
T  28690575 atatgcattggtatgtgtgtcggagtcaactaggtcatctaatatgtgacggagggagtataa 28690513  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 9145561 - 9145517
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatat 59  Q
    |||||||||||||||| |||||||||||| |||||||||||||||    
T  9145561 atatgcattggtacgtgtgtcggagtcaactaggtcatctaatat 9145517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 15503084 - 15503044
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatcta 55  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  15503084 atatgcattgatacgtatgtcggagtcaattaggtcatcta 15503044  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 10435193 - 10435134
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagagagta 74  Q
    |||||||||||||||| ||||| |||||| ||| |||| |||||| ||||||| ||||||    
T  10435193 atatgcattggtacgtgtgtcgaagtcaactagatcatttaatatgggacggatagagta 10435134  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 46483610 - 46483570
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatcta 55  Q
    |||||||||||||||| |||| ||||||| |||||||||||    
T  46483610 atatgcattggtacgtgtgtcagagtcaactaggtcatcta 46483570  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 13207155 - 13207214
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagagagta 74  Q
    |||||||||||||||| |||| ||||||| ||||||||||||| ||||||||||||||||    
T  13207155 atatgcattggtacgtgtgtcagagtcaactaggtcatctaatgtaggacggagagagta 13207214  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 19068968 - 19069030
Alignment:
Q  13 atatatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagagagtat 75  Q
    ||||||| |||||||||| | ||||||| || || ||||||||| || |||||||||||||||    
T  19068968 atatatgtattggtacgtgtatcggagttaactaagtcatctaaaatcggacggagagagtat 19069030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 30237224 - 30237184
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatcta 55  Q
    |||||||||||||||| |||| ||||||| |||||||||||    
T  30237224 atatgcattggtacgtgtgtcagagtcaactaggtcatcta 30237184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 44123732 - 44123672
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagagagtat 75  Q
    |||||||||| ||||| |||||||||||| ||| ||||||||||| |||||||||||||||    
T  44123732 atatgcattgatacgtgtgtcggagtcaactagatcatctaatatgggacggagagagtat 44123672  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 886269 - 886323
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggaga 69  Q
    |||||||||||||||| ||||||||||||  |||||||||||||| |||| ||||    
T  886269 atatgcattggtacgtgtgtcggagtcaaccaggtcatctaatatgggacagaga 886323  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 11854585 - 11854524
Alignment:
Q  13 atatatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagagagta 74  Q
    |||||||||||||||||| ||||| |||||| ||| || | |||||| |||||||| |||||    
T  11854585 atatatgcattggtacgtgtgtcgaagtcaactagatcgtttaatatgggacggagggagta 11854524  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 9302577 - 9302609
Alignment:
Q  37 gagtcaattaggtcatctaatataggacggaga 69  Q
    |||||||||||||||||||||||||||| ||||    
T  9302577 gagtcaattaggtcatctaatataggacagaga 9302609  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 16751655 - 16751714
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagagagta 74  Q
    |||||||||||||||| |||||||||||| ||||||||||||||| | |||||| |||||    
T  16751655 atatgcattggtacgtgtgtcggagtcaactaggtcatctaatatggaacggagggagta 16751714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 38738180 - 38738233
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggag 68  Q
    |||||||||||||||| |||||||||||| |||||||||||||||  |||||||    
T  38738180 atatgcattggtacgtgtgtcggagtcaactaggtcatctaatattagacggag 38738233  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 50481337 - 50481277
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagagagtat 75  Q
    |||||||||||||||| ||||||| |||| || |||||||||||| |||||||| ||||||    
T  50481337 atatgcattggtacgtgtgtcggaatcaactaagtcatctaatatgggacggagggagtat 50481277  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 23330511 - 23330449
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagagagtataa 77  Q
    |||||||||| ||| ||||||||| |||| ||| ||||||||||| ||||| |||||||||||    
T  23330511 atatgcattgatacatatgtcggaatcaactagatcatctaatatgggacgtagagagtataa 23330449  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 47222273 - 47222220
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggag 68  Q
    |||||||||||||||| |||||||||||| |||||||| |||||| ||| ||||    
T  47222273 atatgcattggtacgtgtgtcggagtcaactaggtcatttaatatgggatggag 47222220  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 32565805 - 32565741
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagagagtataata 79  Q
    |||||||||||||||| |||| ||||||| || |||||||| |  ||||||||| ||||||||||    
T  32565805 atatgcattggtacgtgtgtcagagtcaactaagtcatctattgaaggacggagggagtataata 32565741  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 3898773 - 3898832
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagagagta 74  Q
    |||||||||||||||| ||||| |||||| ||| |||| |||||| |||||||| |||||    
T  3898773 atatgcattggtacgtctgtcgaagtcaactagatcatttaatatgggacggagggagta 3898832  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 14075794 - 14075741
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggag 68  Q
    ||||||||||||| || |||||||||||| | | ||||||||||| ||||||||    
T  14075794 atatgcattggtatgtgtgtcggagtcaactcgatcatctaatatgggacggag 14075741  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 16266221 - 16266168
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggag 68  Q
    |||||||||||||||| ||||| |||||| ||| |||| |||||| ||||||||    
T  16266221 atatgcattggtacgtgtgtcgaagtcaactagatcatttaatatgggacggag 16266168  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 4605057 - 4605017
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatcta 55  Q
    |||||||||||||||| |||||||||||| ||| |||||||    
T  4605057 atatgcattggtacgtgtgtcggagtcaactagatcatcta 4605017  T

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Target: scaffold0111 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 38562 - 38615
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggag 68  Q
    |||||||||||||||||||||| |||||| ||  ||||||||||||| ||||||    
T  38562 atatgcattggtacgtatgtcgaagtcaactaaatcatctaatatagaacggag 38615  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 42421744 - 42421683
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagagagtata 76  Q
    |||||||| ||||||| |||||||||||| ||| ||||||||||| | |||||| |||||||    
T  42421744 atatgcataggtacgtgtgtcggagtcaactagatcatctaatatggaacggagtgagtata 42421683  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 35290347 - 35290283
Alignment:
Q  13 atatatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagagagtataa 77  Q
    |||||||||||||||||| |||| ||||||| ||||||||||| |   |||||||| ||||||||    
T  35290347 atatatgcattggtacgtgtgtcagagtcaactaggtcatctattgagggacggagggagtataa 35290283  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 16048142 - 16048083
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagagagta 74  Q
    |||||||||||||||| ||||| |||||| ||| |||| | |||| ||||||||||||||    
T  16048142 atatgcattggtacgtgtgtcgaagtcaactagatcatttgatatgggacggagagagta 16048083  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 19087973 - 19088016
Alignment:
Q  16 tatgcattggtacgtatgtcggagtcaattaggtcatctaatat 59  Q
    ||||||||||||||| |||||||||||| || ||||||||||||    
T  19087973 tatgcattggtacgtgtgtcggagtcaactacgtcatctaatat 19088016  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 25563559 - 25563509
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacg 65  Q
    ||||||||||| |||| ||| | |||||| |||||||||||||||||||||    
T  25563559 atatgcattggaacgtgtgttgaagtcaactaggtcatctaatataggacg 25563509  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 43067288 - 43067235
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggag 68  Q
    |||||||||||||||| ||||| |||||| ||| |||| |||||| ||||||||    
T  43067288 atatgcattggtacgtgtgtcgaagtcaactagatcatttaatatgggacggag 43067235  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 14475436 - 14475476
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatcta 55  Q
    ||||||||| |||||| |||||||||||| |||||||||||    
T  14475436 atatgcatttgtacgtgtgtcggagtcaactaggtcatcta 14475476  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 19889713 - 19889669
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatat 59  Q
    |||||||||||||||| | |||||||||| |||||| ||||||||    
T  19889713 atatgcattggtacgtgtatcggagtcaactaggtcctctaatat 19889669  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 30779947 - 30779987
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatcta 55  Q
    ||||| |||||||||| |||||||||||| |||||||||||    
T  30779947 atatgtattggtacgtgtgtcggagtcaactaggtcatcta 30779987  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 37843777 - 37843817
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatcta 55  Q
    |||||||||||||||| |||| ||||||| |||||||||||    
T  37843777 atatgcattggtacgtgtgtcagagtcaactaggtcatcta 37843817  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 32776102 - 32776163
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagagagtata 76  Q
    |||||||||||||||| | |||||||||| ||||||||||| ||  |||||||| |||||||    
T  32776102 atatgcattggtacgtgtatcggagtcaactaggtcatctattaagggacggagggagtata 32776163  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 332335 - 332278
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagagagta 74  Q
    |||||| |||||||||  ||||||||||| ||||||||||||||| |||||||| |||||    
T  332335 atatgcgttggtacgt--gtcggagtcaaataggtcatctaatatgggacggagggagta 332278  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 40598187 - 40598128
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagagagta 74  Q
    |||||||||||||||| ||||| |||||| ||| |||| |||||| |||||||| |||||    
T  40598187 atatgcattggtacgtgtgtcgaagtcaactagatcatttaatatgggacggagggagta 40598128  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 41463719 - 41463756
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcat 52  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  41463719 atatgcattggtacgtgtgtcggagtcaactaggtcat 41463756  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 38137732 - 38137776
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatat 59  Q
    ||||||||| |||||| |||||||||||| ||| |||||||||||    
T  38137732 atatgcatttgtacgtgtgtcggagtcaactagatcatctaatat 38137776  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 40898699 - 40898643
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagaga 71  Q
    |||| |||| |||||| |||||||||||| ||| |||||||||||| || |||||||    
T  40898699 atatacattagtacgtgtgtcggagtcaactagatcatctaatataagatggagaga 40898643  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 33613275 - 33613215
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagagagtat 75  Q
    ||||||||||||| |  |||||||||||| ||||||||||||||| ||| |||| ||||||    
T  33613275 atatgcattggtatgcgtgtcggagtcaactaggtcatctaatattggatggagggagtat 33613215  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 34478213 - 34478272
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagagagta 74  Q
    |||||||||||||||| ||||| |||||| ||||| || |||||| |||||||| |||||    
T  34478213 atatgcattggtacgtgtgtcgaagtcaactaggttatttaatatgggacggagggagta 34478272  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 37231766 - 37231825
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacggagagagta 74  Q
    |||||||||||||||| ||||| |||||| ||| |||| |||||| |||||||| |||||    
T  37231766 atatgcattggtacgtgtgtcgaagtcaactagatcatttaatatgggacggagggagta 37231825  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 36643221 - 36643171
Alignment:
Q  15 atatgcattggtacgtatgtcggagtcaattaggtcatctaatataggacg 65  Q
    |||||||||||||||| ||||| |||||||||| |||| |||||| |||||    
T  36643221 atatgcattggtacgtgtgtcgaagtcaattagatcatttaatatgggacg 36643171  T

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