View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_high_69 (Length: 236)
Name: NF17574_high_69
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_high_69 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 16711634 - 16711401
Alignment:
| Q |
1 |
tataagacacctattcatctcaccattagaaaattctttactctcagtcatagctacactataacctaatactttatctaacattcatcgacacctataa |
100 |
Q |
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| T |
16711634 |
tataagacactaattcatctcaccattagaaaattctttactctcagtcatagctacactataacctaatactttatctaacattcatcatcacctataa |
16711535 |
T |
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| Q |
101 |
catcaaccattctca---------taaaccctaacttcattctaacttaaggtttttatctctc---tattattattgtttataatataatcaattttca |
188 |
Q |
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| T |
16711534 |
catcaaccattctcaaccattctcataaccctaacttcattctaacttaagttttttatctctctattattattattgtttataacataatcaattccca |
16711435 |
T |
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| Q |
189 |
caacaaaactccagtatattccaaacatcttatt |
222 |
Q |
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| T |
16711434 |
caacaaaactccagtatatttcaaacatcttatt |
16711401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 199
Target Start/End: Original strand, 15813267 - 15813317
Alignment:
| Q |
149 |
atctctctattattattgtttataatataatcaattttcacaacaaaactc |
199 |
Q |
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| T |
15813267 |
atctctctattactattgtttataacatcatccattctcacaacaaaactc |
15813317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 204
Target Start/End: Complemental strand, 19892476 - 19892309
Alignment:
| Q |
37 |
tttactctcagtcatagctacactataacctaatactttatctaacattcatcgacacctataacatcaaccattctcataaaccctaacttcattctaa |
136 |
Q |
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| T |
19892476 |
tttactcctagtcacaactatactatgacctagcactttatctcacattcatcataacctataacatcaaccat-ctccgtaaccctaacttcatttcaa |
19892378 |
T |
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| Q |
137 |
cttaaggtttttatctctctattattattgt-ttataatataatcaattttcacaacaaaactccagta |
204 |
Q |
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| T |
19892377 |
cctaaggtctttatctttctattattgttgtcatataacttcatcaattctcacaacaaaactccagta |
19892309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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