View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_high_81 (Length: 201)
Name: NF17574_high_81
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_high_81 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 11035901 - 11035734
Alignment:
| Q |
17 |
gaacaccactataaacaattccataaccaccttcaccaataacattatcttcacacaaaccattagtagcagcttcaagttctcttagggtataccatct |
116 |
Q |
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| T |
11035901 |
gaacaccactataaacaattccataaccaccttcaccaataacattatcttcacacaaaccattagtagcagcttcaagttctcttagcgtataccatct |
11035802 |
T |
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| Q |
117 |
cccccacccaagatgcgaaacttccggtccaacacttccaatagaagatgcagtttcacacacactac |
184 |
Q |
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| T |
11035801 |
cccccacccaagatgcgaaacttccggtccaacacttccaatagaagacgcagtttcacacacactac |
11035734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 28 - 148
Target Start/End: Original strand, 29791030 - 29791150
Alignment:
| Q |
28 |
taaacaattccataaccaccttcaccaataacattatcttcacacaaaccattagtagcagcttcaagttctcttagggtataccatctcccccacccaa |
127 |
Q |
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| T |
29791030 |
taaacaattccataaccaccttcaccaagaacattttcaggacacaatccaccagtagcatcttcaagctctcgcaaagtataccatctaccccatccaa |
29791129 |
T |
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| Q |
128 |
gatgcgaaacttccggtccaa |
148 |
Q |
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|||| || ||||| ||||||| |
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| T |
29791130 |
gatgtgacacttcaggtccaa |
29791150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 6208943 - 6208905
Alignment:
| Q |
27 |
ataaacaattccataaccaccttcaccaataacattatc |
65 |
Q |
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| T |
6208943 |
ataaacaattccataaccaccttcaccaataacattatc |
6208905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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