View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_10 (Length: 521)
Name: NF17574_low_10
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 143 - 501
Target Start/End: Complemental strand, 24561877 - 24561537
Alignment:
| Q |
143 |
caaatgtctaaatcataagatataattagatgcacgtgtaaaatagttatgcgctctaagtacatacaaattaaatcattaactcaacctcacactatat |
242 |
Q |
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| T |
24561877 |
caaatgtataaatcataagatataattagatgcacgtgtaaaata----------------acatacaaattaaatcattaactcaacctcacactat-- |
24561796 |
T |
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| Q |
243 |
tgtaattcaacttactttttaattttatttatggtcactaaattaccgcaggcactgaagaagaggctgcagaagcatacgacatagcagcaataaaatt |
342 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24561795 |
tgtaattcaacttactttttaattttatttatggtcactaaattaccacaggcactgaagaagaggctgcagaagcatacgacatagcagcaataaaatt |
24561696 |
T |
|
| Q |
343 |
cagaggactcaacgctgtaacaaactttgacatgactcgttatgacgtgaaagcaattctcgaaagcaatacacttccaatcggaggaggagctgcaaaa |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||| |
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| T |
24561695 |
cagaggactcaacgctgtaacaaactttgacatgactcgttacgacgtgaaagccattctcgaaagcaacacactgccaattggaggaggagctgcaaaa |
24561596 |
T |
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| Q |
443 |
agactaaaagaagcacaagctctagaaacttcgagaaaacgcgaagaaatgcttgcact |
501 |
Q |
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| T |
24561595 |
agactaaaagaagcacaagctctagaaacttcgagaaaacgcgaagaaatgcttgcact |
24561537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 24562087 - 24561960
Alignment:
| Q |
1 |
aaatttaatttgtatgcgccaacgatgtgaaacacttttatagtacatatactttctatgttctaaattataagcaaaagtaattcaacaaaaaatggtg |
100 |
Q |
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| T |
24562087 |
aaatttaatttgtatgcaccaacaatatgaaacatttttatagtacatatactttctatgttttaaattataagcaaaagtaattcaacaaaaaatgatg |
24561988 |
T |
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| Q |
101 |
tatttggtccaaaattttaaccaaatat |
128 |
Q |
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| T |
24561987 |
catttggtccaaaattttaaccaaatat |
24561960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 292 - 390
Target Start/End: Complemental strand, 53233918 - 53233820
Alignment:
| Q |
292 |
aggcactgaagaagaggctgcagaagcatacgacatagcagcaataaaattcagaggactcaacgctgtaacaaactttgacatgactcgttatgacgt |
390 |
Q |
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| T |
53233918 |
aggcactcaagaagaagctgcagaagcgtatgatattgcagcaatcaaatttagaggactaaatgcagtaacaaattttgacatgagtcggtacgacgt |
53233820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 302 - 481
Target Start/End: Complemental strand, 41963863 - 41963684
Alignment:
| Q |
302 |
gaagaggctgcagaagcatacgacatagcagcaataaaattcagaggactcaacgctgtaacaaactttgacatgactcgttatgacgtgaaagcaattc |
401 |
Q |
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|||||||||||||||||||| |||||||| ||||| |||||||||||| | ||||| ||||||||||||||||||| |||||| ||||||||||| |||| |
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| T |
41963863 |
gaagaggctgcagaagcatatgacatagctgcaatcaaattcagaggattaaacgcagtaacaaactttgacatgaatcgttacgacgtgaaagcgattc |
41963764 |
T |
|
| Q |
402 |
tcgaaagcaatacacttccaatcggaggaggagctgcaaaaagactaaaagaagcacaagctctagaaacttcgagaaaa |
481 |
Q |
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| T |
41963763 |
ttgaaagtatcactctcccaataggaggaggtgctgcaaaaagattaaaagaagcacaagctctagaatcttctagaaaa |
41963684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 377
Target Start/End: Complemental strand, 30618392 - 30618307
Alignment:
| Q |
292 |
aggcactgaagaagaggctgcagaagcatacgacatagcagcaataaaattcagaggactcaacgctgtaacaaactttgacatga |
377 |
Q |
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||||||| |||||||||| ||||| ||||| || | ||||||||||||||||||||||| | || || |||||||||||||||| |
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| T |
30618392 |
aggcactcaagaagaggcagcagaggcatatgatgtggcagcaataaaattcagaggactgagtgcagttacaaactttgacatga |
30618307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 22547534 - 22547574
Alignment:
| Q |
90 |
aaaaaatggtgtatttggtccaaaattttaaccaaatatat |
130 |
Q |
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|||||||| ||||||||||| ||||||| |||||||||||| |
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| T |
22547534 |
aaaaaatgatgtatttggtctaaaatttgaaccaaatatat |
22547574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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