View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_11 (Length: 520)
Name: NF17574_low_11
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 47680612 - 47680969
Alignment:
| Q |
1 |
atgaaggacctacatgcagtgacagcaaggcatggggggctaccctaaag---------gatggaaaagacaggattcgaatttttaaacacagaaacca |
91 |
Q |
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| T |
47680612 |
atgaaggacctacatgcagtgacagcaaggcatggggggctaccctaaagaaaagcaaggatggaaaagacaggattcgaatttttaaacacagaaacca |
47680711 |
T |
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| Q |
92 |
attgtgttgtgacaccctaaccacccatcatgtttgaaaaaccgagacacaaaccaattgcgtttattagggtttgactcaattcattgatgatcatcaa |
191 |
Q |
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| T |
47680712 |
attgtgttgtgacaccctaaccacccatcatgtttgaaaaaccgagacacaaaccaattgcgtttattagggtttgactcaattcattgatgatcatcaa |
47680811 |
T |
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| Q |
192 |
tactatacaacaataatggattttttggcgatagtgtataatgtagctattactttgtacatccatgtatatttggtagtatatggtattgcatttatat |
291 |
Q |
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| T |
47680812 |
tac--tacaacaataatggattttttggcgatagtgtataatgtagctattactttgtacatccatgtataattggtagtatatggtattgcatttatat |
47680909 |
T |
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| Q |
292 |
ttggaattaatgatacatattatatatgatgtgcgaatcttacaaaagaggagcaattcccctt |
355 |
Q |
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| T |
47680910 |
ttggaattaatgatacatat----tatgatgtgggaatcttacaaaagaggagcaattcccctt |
47680969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 428 - 502
Target Start/End: Original strand, 47681042 - 47681116
Alignment:
| Q |
428 |
aagagtaagagaaatgagagcctgcaatttcctgcttcatgtgtttccaatggaaagggatatctataatatgtt |
502 |
Q |
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| T |
47681042 |
aagagtaagagaaatgagagcctgcaatttcctgcttcatgtgtttccaatggaaagggatatctataatatgtt |
47681116 |
T |
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