View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_14 (Length: 473)
Name: NF17574_low_14
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 95 - 462
Target Start/End: Complemental strand, 29468661 - 29468296
Alignment:
| Q |
95 |
taaaaccagtgacaatttctaaaagttaatgaatttctaagaatgcatcaactatttcaagatttattttccctcatcaagtggcataaatttctctaca |
194 |
Q |
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| T |
29468661 |
taaaaccggtgacaatttctaaaagttaatgaatttctaagaatgcatcaactatttcaatatttattttccctcatcaagtggcataaatttctctaca |
29468562 |
T |
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| Q |
195 |
aatatgttcaatatgttcaaaaaatattgtcaaacaagaaaaggttaatgttgtcttcatgcctcgttgagcttacaatgaaaggtttcaaaagacctac |
294 |
Q |
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| T |
29468561 |
aatatgttcaatatgttcaaaaaatattgtcaaacaagaaaaggttaatgttgtcttcatgcctcgttgagcttacaatgaaaggtttcaaaagacctac |
29468462 |
T |
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| Q |
295 |
cggcatgtccaacctataaagtttttgagcatcaacctcgaccaaaactaaaacactaccttatttgttgcacagctgaatcacaaagtatgtaannnnn |
394 |
Q |
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| T |
29468461 |
cggcatgtccaacctataaagtttttgagcatcaacctcgaccaaaactaaaacactaccttatttctcgcacagctgaatcacaaagtatgtaa--ttt |
29468364 |
T |
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| Q |
395 |
nnngtccttattacatgtcttcggcaagagaatcacacaattctcctctttttggcattgtttttcat |
462 |
Q |
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| T |
29468363 |
tttgtccttattacatgtcttcggcaagagaatcacacaattctcctctttttggcattgtttttcat |
29468296 |
T |
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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 292 - 377
Target Start/End: Complemental strand, 14999603 - 14999520
Alignment:
| Q |
292 |
taccggcatgtccaacctataaagtttttgagcatcaacctcgaccaaaactaaaacactaccttatttgttgcacagctgaatca |
377 |
Q |
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| T |
14999603 |
taccagcatgtccaacctaaaaagttt--gagcatcaacctcattcaaaactaaaaaactacattatttgttgcacagctgaatca |
14999520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 460
Target Start/End: Complemental strand, 14999501 - 14999445
Alignment:
| Q |
404 |
attacatgtcttcggcaagagaatcacacaattctcctctttttggcattgtttttc |
460 |
Q |
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| T |
14999501 |
attacatgtctttggcatgagaatcacataattttcctctttttgtcattgtttttc |
14999445 |
T |
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