View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_15 (Length: 472)
Name: NF17574_low_15
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 1720810 - 1721266
Alignment:
| Q |
1 |
agaacacttgctatacatcgtaataagagcatttgcaacatatacactgaaatccaacgacattttcaaagcagcagcatgtacctgcaagccatattta |
100 |
Q |
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| T |
1720810 |
agaacacttgctatacatcgtaataagagcatttgcaacatatacactgaaatccaacgacattttcaaagcagcagcatgtacctgcaagccatattta |
1720909 |
T |
|
| Q |
101 |
acatcttgctcttcacaagcacagagcacacttgcaaaagcaaattcattgggtcgaaaacacgccaacataccagagaataaagcgaaacactctctaa |
200 |
Q |
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| T |
1720910 |
acatcttgctcttcacaagcacagagcacacttgcaaaagcaaattcattgggtcgaaaacacgccaacataccagagaataaagcgaaacactctctaa |
1721009 |
T |
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| Q |
201 |
ttaaaccaaactgcgcatacccagaaacaagaacagtccaagaaacaaagtttcttctcggcatttgatcaaacaggtagcgtgcataatctaaatggcc |
300 |
Q |
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| T |
1721010 |
ttaaaccaaactgcgcatacccagaaacaagaacagtccaagaaacaaagtttcttctcggcatttgatcaaacaggtagcgtgcataatctaaatggcc |
1721109 |
T |
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| Q |
301 |
acatttacagtacatgtttaagaggttattagtaagaaaaacatcattttgaattttggggtgtttgttaagtatgtaatgatgcaatgccatgccttgt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1721110 |
acatttacagtacatgtttaagaggttattagtaagaaaaatatcattttgaattttggggtgtttgttaagtatgtaatgatgcaatgccatgccttgt |
1721209 |
T |
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| Q |
401 |
ttgatgtattttttctgagcacaagcatggaagagaaatgcatagtcttgaagggtt |
457 |
Q |
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| T |
1721210 |
ttgatgtattttttctgagcacaagcatggaagagaaatgcatagtcttgaagggtt |
1721266 |
T |
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