View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_18 (Length: 430)
Name: NF17574_low_18
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 20 - 418
Target Start/End: Original strand, 25386940 - 25387338
Alignment:
| Q |
20 |
atattaagtttcaagatgcatatgttttattggtctggtgccaatattctaaaaattaatgattcaaatctgtgttcaaagagataaaatgtacaaacta |
119 |
Q |
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| T |
25386940 |
atattaagtttcaagatgcatatgtcttattggtctggtggcaatattctaaaaattaatgattcaaatctgtgttcaaagagataaaatgtacaaacta |
25387039 |
T |
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| Q |
120 |
agagttaaaatgtctaacctctctaagcgtctctgatgctgtcctgcttgggaagtgttgatcaatggaaatcctgtttcctaaatcaagctccatttca |
219 |
Q |
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| T |
25387040 |
agagttaaaatgtctaacctctctaagtgtctctgatgctgtcctgcttgggaagtgttgatcaatggaaatcctgtttcctaaatcaagctccatttca |
25387139 |
T |
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| Q |
220 |
cttttcatcaagtttctgaaaccatgcactttcatagcttccttaaaggaaatatgttgagaggaacattctgaatctgatccaaatgaattacttgata |
319 |
Q |
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| T |
25387140 |
cttttcatcaagtttctgaaaccatgcactttcatagcttccttaaaggaaatatgttgagaggaacattctgaatctgatccaaatgaattacttgata |
25387239 |
T |
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| Q |
320 |
ttgtttccattacttcatgatttaaatcactttcgctattcacgtcacactttctttctggtaaaacttccctatcgatgcaaatgtcctttacatatt |
418 |
Q |
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| T |
25387240 |
ttgtttccattacttcatgatttaaatcactttcgctattcacgtcacactttctttctggtaaaacttccctatcgatgcaaatgtcctttacatatt |
25387338 |
T |
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