View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17574_low_19 (Length: 427)

Name: NF17574_low_19
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17574_low_19
NF17574_low_19
[»] chr5 (6 HSPs)
chr5 (10-427)||(30321006-30321421)
chr5 (332-420)||(3696953-3697041)
chr5 (332-420)||(3699315-3699403)
chr5 (332-420)||(3869747-3869835)
chr5 (334-368)||(10689376-10689410)
chr5 (332-405)||(14188623-14188696)
[»] chr2 (7 HSPs)
chr2 (10-427)||(3648483-3648901)
chr2 (330-408)||(21416139-21416217)
chr2 (330-408)||(2878047-2878125)
chr2 (330-408)||(24257012-24257090)
chr2 (332-405)||(39439797-39439870)
chr2 (336-408)||(19815130-19815202)
chr2 (332-408)||(39437094-39437170)
[»] chr6 (8 HSPs)
chr6 (10-427)||(25335413-25335829)
chr6 (287-420)||(15652027-15652160)
chr6 (10-72)||(2197632-2197693)
chr6 (182-250)||(15651898-15651966)
chr6 (330-408)||(4214280-4214358)
chr6 (18-61)||(24200051-24200094)
chr6 (330-408)||(24201033-24201111)
chr6 (182-222)||(12578180-12578220)
[»] chr1 (5 HSPs)
chr1 (10-427)||(2346176-2346591)
chr1 (330-408)||(16651617-16651695)
chr1 (10-72)||(6301186-6301247)
chr1 (62-107)||(6301269-6301314)
chr1 (202-247)||(2347364-2347409)
[»] chr4 (3 HSPs)
chr4 (182-250)||(612181-612249)
chr4 (330-408)||(49715098-49715176)
chr4 (287-424)||(612310-612447)
[»] scaffold0029 (1 HSPs)
scaffold0029 (330-408)||(130964-131042)
[»] scaffold0002 (1 HSPs)
scaffold0002 (330-408)||(308781-308859)
[»] chr8 (4 HSPs)
chr8 (329-420)||(35136474-35136565)
chr8 (330-408)||(21107367-21107445)
chr8 (182-220)||(14786563-14786601)
chr8 (182-259)||(35136302-35136379)
[»] scaffold0286 (1 HSPs)
scaffold0286 (10-72)||(22581-22642)
[»] chr3 (3 HSPs)
chr3 (10-72)||(11307443-11307504)
chr3 (330-408)||(37798796-37798874)
chr3 (182-222)||(11307960-11308000)
[»] scaffold0583 (1 HSPs)
scaffold0583 (342-408)||(7379-7445)
[»] chr7 (1 HSPs)
chr7 (350-408)||(45116961-45117019)


Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 10 - 427
Target Start/End: Complemental strand, 30321421 - 30321006
Alignment:
Q  10 aagaatatcaaaaatatgatttcagttaattgtatttaacggacttgctaaaataaaccttaagtcatgggctgattgaaaaagttaattacgctccttg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  30321421 aagaatatcaaaaatatgatttcagttaattgtatttaacggacttgctaaaataaaccttaagtcatgggctgattgaaaaagttaattacgctgctt- 30321323  T
Q  110 acacnnnnnnnnnntgtattacttaatgactaagatataaatttaaatatgaattgtcgagttgaatgtgaatattttacgaaattatcctgtaaaatat 209  Q
     |||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30321322 -cacaaaaaaaaaatgtattacttaatgactaagatataaatttaaatatgaattgtcgagttgaatgtgaatattttacgaaattatcctgtaaaatat 30321224  T
Q  210 actataaattagacattttggctaacactttcttcacatcagaatttcaattctccatttttctttctttcgatttcgtatctctctttacacttcaaat 309  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30321223 actataaattagacatcttggctaacactttcttcacatcagaatttcaattctccatttttctttctttcgatttcgtatctctctttacacttcaaat 30321124  T
Q  310 ggctcaaaaaatcaattatgtttctgatatttccccttcgaaagaaaattggaatatcatggttcgagtcattcaactttggtttgttagggatatgaac 409  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30321123 ggttcaaaaaatcaattatgtttctgatatttccccttcgaaagaaaattggaatatcatggttcgagtcattcaactttggtttgttagggatatgaac 30321024  T
Q  410 acggacaaactgtctatt 427  Q
    | ||||||||||||||||    
T  30321023 aaggacaaactgtctatt 30321006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 420
Target Start/End: Complemental strand, 3697041 - 3696953
Alignment:
Q  332 tctgatatttccccttcgaaagaaaattggaatatcatggttcgagtcattcaactttggtttgttagggatatgaacacggacaaact 420  Q
    ||||||||||||||||||||| ||||||| ||||| | |||||||||| ||||  | |||||| | || || ||||||| |||||||||    
T  3697041 tctgatatttccccttcgaaaaaaaattgtaatattagggttcgagtcgttcagatgtggtttatgagagacatgaacaaggacaaact 3696953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 420
Target Start/End: Complemental strand, 3699403 - 3699315
Alignment:
Q  332 tctgatatttccccttcgaaagaaaattggaatatcatggttcgagtcattcaactttggtttgttagggatatgaacacggacaaact 420  Q
    ||||||||||||||||||||| ||||||| ||||| | |||||||||| ||||  | |||||| | || || ||||||| |||||||||    
T  3699403 tctgatatttccccttcgaaaaaaaattgtaatattagggttcgagtcgttcagatgtggtttatgagagacatgaacaaggacaaact 3699315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 420
Target Start/End: Original strand, 3869747 - 3869835
Alignment:
Q  332 tctgatatttccccttcgaaagaaaattggaatatcatggttcgagtcattcaactttggtttgttagggatatgaacacggacaaact 420  Q
    ||||||||||||||||||||| ||||||| ||||| | |||||||||| ||||  | |||||| | || || ||||||| |||||||||    
T  3869747 tctgatatttccccttcgaaaaaaaattgtaatattagggttcgagtcgttcagatgtggtttatgagagacatgaacaaggacaaact 3869835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 368
Target Start/End: Original strand, 10689376 - 10689410
Alignment:
Q  334 tgatatttccccttcgaaagaaaattggaatatca 368  Q
    ||||||||||||||| |||||||||||||||||||    
T  10689376 tgatatttccccttcaaaagaaaattggaatatca 10689410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 405
Target Start/End: Original strand, 14188623 - 14188696
Alignment:
Q  332 tctgatatttccccttcgaaagaaaattggaatatcatggttcgagtcattcaactttggtttgttagggatat 405  Q
    |||||||| |||||||| ||||||||  ||| |||||| ||||||||| |||  ||||||||||| || |||||    
T  14188623 tctgatatatccccttccaaagaaaaccggactatcatcgttcgagtcgttcgcctttggtttgtgagagatat 14188696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 10 - 427
Target Start/End: Complemental strand, 3648901 - 3648483
Alignment:
Q  10 aagaatatcaaaaatatgatttcagttaattgtatttaacggacttgctaaaataaaccttaagtcatgggctgattgaaaaagttaattacgctccttg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3648901 aagaatatcaaaaatatgatttcagttaattgtatttaacggacttgctaaaataaaccttaagtcatgggctgattgaaaaagttaattacactccttg 3648802  T
Q  110 acacnnnnnnnnnn-tgtattacttaatgactaagatataaatttaaatatgaattgtcgagttgaatgtgaatattttacgaaattatcctgtaaaata 208  Q
    |||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3648801 acaaaaaaaacaatatgtattacttaatgactaagatataaatttaaatatgaattgtcgagttgaatgtgaatattttacgaaattatcctgtaaaata 3648702  T
Q  209 tactataaattagacattttggctaacactttcttcacatcagaatttcaattctccatttttctttctttcgatttcgtatctctctttacacttcaaa 308  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3648701 tactataaattagacatgttggctaacactttcttcacatcagaatttcaattctccatttttctttctttcgatttcgtatctctctttacacttcaaa 3648602  T
Q  309 tggctcaaaaaatcaattatgtttctgatatttccccttcgaaagaaaattggaatatcatggttcgagtcattcaactttggtttgttagggatatgaa 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3648601 tggctcaaaaaatcaattatgtttctgatatttccccttcgaaagaaaattagaatatcatggttcgagtcattcaactttggtttgttagggatatgaa 3648502  T
Q  409 cacggacaaactgtctatt 427  Q
    || ||||||||||||||||    
T  3648501 caaggacaaactgtctatt 3648483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 330 - 408
Target Start/End: Complemental strand, 21416217 - 21416139
Alignment:
Q  330 tttctgatatttccccttcgaaagaaaattggaatatcatggttcgagtcattcaactttggtttgttagggatatgaa 408  Q
    |||||||||| |||||||| ||||||||||||||||||| |||||||||| |||  ||||||||||| |||||||||||    
T  21416217 tttctgatatatccccttccaaagaaaattggaatatcagggttcgagtcgttcgcctttggtttgtgagggatatgaa 21416139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 330 - 408
Target Start/End: Original strand, 2878047 - 2878125
Alignment:
Q  330 tttctgatatttccccttcgaaagaaaattggaatatcatggttcgagtcattcaactttggtttgttagggatatgaa 408  Q
    |||||||||| |||||||| ||||||||||| ||||||| |||||||||| |||   |||||||||| |||||||||||    
T  2878047 tttctgatatatccccttccaaagaaaattgaaatatcagggttcgagtcgttcgcttttggtttgtgagggatatgaa 2878125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 330 - 408
Target Start/End: Original strand, 24257012 - 24257090
Alignment:
Q  330 tttctgatatttccccttcgaaagaaaattggaatatcatggttcgagtcattcaactttggtttgttagggatatgaa 408  Q
    |||||||||| |||||||| ||||||||||||||||| | |||| ||||| |||  ||||||||||| |||||||||||    
T  24257012 tttctgatatatccccttccaaagaaaattggaatattagggtttgagtcgttcgcctttggtttgtgagggatatgaa 24257090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 405
Target Start/End: Original strand, 39439797 - 39439870
Alignment:
Q  332 tctgatatttccccttcgaaagaaaattggaatatcatggttcgagtcattcaactttggtttgttagggatat 405  Q
    |||||||| |||||||| ||||||||  ||| ||||||||||| |||| |||  ||||| ||||| ||||||||    
T  39439797 tctgatatatccccttccaaagaaaaccggactatcatggttcaagtcgttcgcctttgatttgtgagggatat 39439870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 408
Target Start/End: Original strand, 19815130 - 19815202
Alignment:
Q  336 atatttccccttcgaaagaaaattggaatatcatggttcgagtcattcaactttggtttgttagggatatgaa 408  Q
    |||| |||||||| ||||||||||||| ||||| ||||||| || ||   |||| |||||| |||||||||||    
T  19815130 atatatccccttccaaagaaaattggactatcagggttcgaatcgtttgcctttagtttgtgagggatatgaa 19815202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 408
Target Start/End: Original strand, 39437094 - 39437170
Alignment:
Q  332 tctgatatttccccttcgaaagaaaattggaatatcatggttcgagtcattcaactttggtttgttagggatatgaa 408  Q
    |||||||| |||||||| ||| |||| | |||||||| |||||||||| |||   ||| |||||| |||||||||||    
T  39437094 tctgatatatccccttccaaaaaaaactagaatatcagggttcgagtcgttcgcatttagtttgtgagggatatgaa 39437170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 10 - 427
Target Start/End: Original strand, 25335413 - 25335829
Alignment:
Q  10 aagaatatcaaaaatatgatttcagttaattgtatttaacggacttgctaaaataaaccttaagtcatgggctgattgaaaaagttaattacgctccttg 109  Q
    |||||||||||||||||||||||||||||||||||  |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25335413 aagaatatcaaaaatatgatttcagttaattgtatgcaacgaatttgctaaaataaaccttaagtcatgggctgattgaaaaagttaattacgctccttg 25335512  T
Q  110 acacnnnnnnnnnntgtattacttaatgactaagatataaatttaaatatgaattgtcgagttgaatgtgaatattttacgaaattatcctgtaaaatat 209  Q
    | |           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25335513 aaa-aaaaaaaatatgtattacttaatgactaagatataaatttaaatatgaattgtcgagtttaatgtgaatattttacgaaattatcctgtaaaatat 25335611  T
Q  210 actataaattagacattttggctaacactttcttcacatcagaatttcaattctccatttttctttctttcgatttcgtatctctctttacacttcaaat 309  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25335612 actataaattagacatgttggctaacactttcttcacatcataatttcaattctccatttttctttctttcgattttgtatctctctttacacttcaaat 25335711  T
Q  310 ggctcaaaaaatcaattatgtttctgatatttccccttcgaaagaaaattggaatatcatggttcgagtcattcaactttggtttgttagggatatgaac 409  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25335712 ggctcaaaaaatcaattatgtttatgatatttccccttcgaaagaaaattggaatatcatggttcgagtcactcaactttggtttgttagggatatgaac 25335811  T
Q  410 acggacaaactgtctatt 427  Q
    | ||||||||||||||||    
T  25335812 aaggacaaactgtctatt 25335829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 287 - 420
Target Start/End: Original strand, 15652027 - 15652160
Alignment:
Q  287 gtatctctctttacacttcaaatggctcaaaaaatcaattatgtttctgatatttccccttcgaaagaaaattggaatatcatggttcgagtcattcaac 386  Q
    ||||||||||||| | | |||||| ||| ||||||| |||  |||  |||||| |||||||||||||||||||||||||||| |||||||   ||||       
T  15652027 gtatctctctttaaaatccaaatgtctcgaaaaatcgatttcgttggtgatatatccccttcgaaagaaaattggaatatcagggttcgaaatattcggt 15652126  T
Q  387 tttggtttgttagggatatgaacacggacaaact 420  Q
    |||||||||| || |||||||||| |||||||||    
T  15652127 tttggtttgtgagagatatgaacaaggacaaact 15652160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 2197632 - 2197693
Alignment:
Q  10 aagaatatcaaaaatatgatttcagttaattgtatttaacggacttgctaaaataaaccttaa 72  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||    
T  2197632 aagaatatcaaaaatatgatttcagttgattgtatttaa-ggacttgctaaaataaacgttaa 2197693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 182 - 250
Target Start/End: Original strand, 15651898 - 15651966
Alignment:
Q  182 tattttacgaaattatcctgtaaaatatactataaattagacattttggctaacactttcttcacatca 250  Q
    ||||||||||||||||||| |||||||||||||||||||||| | ||||||| |  |||||||||||||    
T  15651898 tattttacgaaattatcctttaaaatatactataaattagacctattggctagccgtttcttcacatca 15651966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 330 - 408
Target Start/End: Original strand, 4214280 - 4214358
Alignment:
Q  330 tttctgatatttccccttcgaaagaaaattggaatatcatggttcgagtcattcaactttggtttgttagggatatgaa 408  Q
    |||||||||| |||||||| |||||||||||||||| || | |||||||| |||  ||||||||||| |||||||||||    
T  4214280 tttctgatatatccccttccaaagaaaattggaatagcaggattcgagtcgttcgcctttggtttgtgagggatatgaa 4214358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 24200094 - 24200051
Alignment:
Q  18 caaaaatatgatttcagttaattgtatttaacggacttgctaaa 61  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  24200094 caaaaatatgatttcagttgattgtatttaacggacttgctaaa 24200051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 330 - 408
Target Start/End: Complemental strand, 24201111 - 24201033
Alignment:
Q  330 tttctgatatttccccttcgaaagaaaattggaatatcatggttcgagtcattcaactttggtttgttagggatatgaa 408  Q
    |||||||||| |||||||| |||||||| || ||||||| |||||||||| | |  ||||||||||| |||||||||||    
T  24201111 tttctgatatatccccttccaaagaaaactgaaatatcagggttcgagtcgtccgcctttggtttgtgagggatatgaa 24201033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 12578180 - 12578220
Alignment:
Q  182 tattttacgaaattatcctgtaaaatatactataaattaga 222  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  12578180 tattttacgaaattatcctgtaaaatataatataaattaga 12578220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 10 - 427
Target Start/End: Complemental strand, 2346591 - 2346176
Alignment:
Q  10 aagaatatcaaaaatatgatttcagttaattgtatttaacggacttgctaaaataaaccttaagtcatgggctgattgaaaaagttaattacgctccttg 109  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2346591 aagaatatcaaaaatatgatttcaattgattgtatttaacggacttgctaaaataaaccttaagtcatgggctgattgaaaaagttaattacgctcattg 2346492  T
Q  110 acacnnnnnnnnnntgtattacttaatgactaagatataaatttaaatatgaattgtcgagttgaatgtgaatattttacgaaattatcctgtaaaatat 209  Q
    | |           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  2346491 aaa--aaaaaaatatgtattacttaatgactaagatataaatttaaatatgaattgtcgagttgaatgtgaatattttacaaaattatcctataaaatat 2346394  T
Q  210 actataaattagacattttggctaacactttcttcacatcagaatttcaattctccatttttctttctttcgatttcgtatctctctttacacttcaaat 309  Q
    | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2346393 attataaattagacatgttggctaacactttcttcacatcagaatttcaattctccatttttctttctttcgatttcgtatctctctttacacttcaaat 2346294  T
Q  310 ggctcaaaaaatcaattatgtttctgatatttccccttcgaaagaaaattggaatatcatggttcgagtcattcaactttggtttgttagggatatgaac 409  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2346293 ggctcaaaaaatcaattatgtttctcatatctccccttcgaaagaaaattggaatatcatggttcgagtcattcaactttgatttgttagggatatgaac 2346194  T
Q  410 acggacaaactgtctatt 427  Q
    | ||||||||| ||||||    
T  2346193 aaggacaaactatctatt 2346176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 330 - 408
Target Start/End: Original strand, 16651617 - 16651695
Alignment:
Q  330 tttctgatatttccccttcgaaagaaaattggaatatcatggttcgagtcattcaactttggtttgttagggatatgaa 408  Q
    |||||||||| |||||||| ||||||||||||||||||| |||||||||| |||  ||||||||||| |||||||||||    
T  16651617 tttctgatatatccccttccaaagaaaattggaatatcagggttcgagtcgttcgcctttggtttgtgagggatatgaa 16651695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 6301186 - 6301247
Alignment:
Q  10 aagaatatcaaaaatatgatttcagttaattgtatttaacggacttgctaaaataaaccttaa 72  Q
    ||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||| ||||    
T  6301186 aagaatatcaaaaatatgatttcagttgattgtacttaa-ggacttgctaaaataaactttaa 6301247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 6301269 - 6301314
Alignment:
Q  62 ataaaccttaagtcatgggctgattgaaaaagttaattacgctcct 107  Q
    ||||||||||| |||||||||||||||||||||| |||| ||||||    
T  6301269 ataaaccttaaatcatgggctgattgaaaaagtttattatgctcct 6301314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 2347409 - 2347364
Alignment:
Q  202 taaaatatactataaattagacattttggctaacactttcttcaca 247  Q
    |||||| || |||||||||||||| ||||| |||||||||||||||    
T  2347409 taaaatctattataaattagacatattggccaacactttcttcaca 2347364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 182 - 250
Target Start/End: Original strand, 612181 - 612249
Alignment:
Q  182 tattttacgaaattatcctgtaaaatatactataaattagacattttggctaacactttcttcacatca 250  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||| || |||||||||||||    
T  612181 tattttacgaaattatcctgtaaaatatactataaattagacctattggctagcagtttcttcacatca 612249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 330 - 408
Target Start/End: Complemental strand, 49715176 - 49715098
Alignment:
Q  330 tttctgatatttccccttcgaaagaaaattggaatatcatggttcgagtcattcaactttggtttgttagggatatgaa 408  Q
    |||||||||| |||||||| |||||||| |||||||||| |||||||||| |||  ||||||||||| |||||||||||    
T  49715176 tttctgatatatccccttccaaagaaaactggaatatcagggttcgagtcgttcgcctttggtttgtgagggatatgaa 49715098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 424
Target Start/End: Original strand, 612310 - 612447
Alignment:
Q  287 gtatctctctttacacttcaaatggctcaaaaaatcaattatgtttctgatatttccccttcgaaagaaaattggaatatcatggttcgagtcattcaac 386  Q
    |||| |||||||| | | |||||| ||| ||||||| |||  |||  |||||| |||| ||||||||||||||||||||||| | |||||   |||   |    
T  612310 gtatttctctttaaaatccaaatgtctcgaaaaatcgatttcgttggtgatatatcccattcgaaagaaaattggaatatcaggcttcgaagtattaggc 612409  T
Q  387 tttggtttgttagggatatgaacacggacaaactgtct 424  Q
    |||||||||| || |||||||||| ||| |||||||||    
T  612410 tttggtttgtgagagatatgaacaaggaaaaactgtct 612447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 330 - 408
Target Start/End: Original strand, 130964 - 131042
Alignment:
Q  330 tttctgatatttccccttcgaaagaaaattggaatatcatggttcgagtcattcaactttggtttgttagggatatgaa 408  Q
    |||||||||| |||||||| ||||||||||||||||||| |||||||||| |||  ||||||||||| |||||||||||    
T  130964 tttctgatatatccccttccaaagaaaattggaatatcagggttcgagtcgttcgcctttggtttgtgagggatatgaa 131042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 330 - 408
Target Start/End: Original strand, 308781 - 308859
Alignment:
Q  330 tttctgatatttccccttcgaaagaaaattggaatatcatggttcgagtcattcaactttggtttgttagggatatgaa 408  Q
    |||||||||| |||||||| ||||||||||||||||||| |||||||||| |||  ||||||||||| |||||||||||    
T  308781 tttctgatatatccccttccaaagaaaattggaatatcagggttcgagtcgttcgcctttggtttgtgagggatatgaa 308859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 329 - 420
Target Start/End: Original strand, 35136474 - 35136565
Alignment:
Q  329 gtttctgatatttccccttcgaaagaaaattggaatatcatggttcgagtcattcaactttggtttgttagggatatgaacacggacaaact 420  Q
    ||||||||||| |||||||| ||||||| |||  |||||  |||||||||| ||| ||||||||| |||||||||||||||| |||||||||    
T  35136474 gtttctgatatatccccttcaaaagaaagttgatatatctaggttcgagtcgttcgactttggttcgttagggatatgaacaaggacaaact 35136565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 330 - 408
Target Start/End: Original strand, 21107367 - 21107445
Alignment:
Q  330 tttctgatatttccccttcgaaagaaaattggaatatcatggttcgagtcattcaactttggtttgttagggatatgaa 408  Q
    |||||||||| |||||||| ||||||||||||||||| | |||| ||||| |||  ||||||||||| |||||||||||    
T  21107367 tttctgatatatccccttccaaagaaaattggaatattagggtttgagtcgttcgcctttggtttgtgagggatatgaa 21107445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 14786601 - 14786563
Alignment:
Q  182 tattttacgaaattatcctgtaaaatatactataaatta 220  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  14786601 tattttacgaaattatcctgtaaaatataatataaatta 14786563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 35136302 - 35136379
Alignment:
Q  182 tattttacgaaattatcctgtaaaatatactataaattagacattttggctaacactttcttcacatcagaatttcaa 259  Q
    |||||||||||||||||||| ||||| | |||||||||||| || |||| || || ||| ||||||||| || |||||    
T  35136302 tattttacgaaattatcctgaaaaatctgctataaattagatatgttggttagcagtttattcacatcacaacttcaa 35136379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 22642 - 22581
Alignment:
Q  10 aagaatatcaaaaatatgatttcagttaattgtatttaacggacttgctaaaataaaccttaa 72  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||    
T  22642 aagaatatcaaaaatatgatttcagttgattgtatttaa-ggacttgctaaaataaacgttaa 22581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 11307443 - 11307504
Alignment:
Q  10 aagaatatcaaaaatatgatttcagttaattgtatttaacggacttgctaaaataaaccttaa 72  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||    
T  11307443 aagaatatcaaaaatatgatttcagttgattgtatttaa-ggacttgctaaaataaacgttaa 11307504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 330 - 408
Target Start/End: Original strand, 37798796 - 37798874
Alignment:
Q  330 tttctgatatttccccttcgaaagaaaattggaatatcatggttcgagtcattcaactttggtttgttagggatatgaa 408  Q
    |||||||||| |||||||| ||||||||||| ||||||| |||||||||| |||  ||||||||||| |||||||||||    
T  37798796 tttctgatatatccccttccaaagaaaattgaaatatcagggttcgagtcgttcgcctttggtttgtgagggatatgaa 37798874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 11307960 - 11308000
Alignment:
Q  182 tattttacgaaattatcctgtaaaatatactataaattaga 222  Q
    |||||||| |||||||||||||||| ||||||||| |||||    
T  11307960 tattttaccaaattatcctgtaaaaaatactataagttaga 11308000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0583 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0583
Description:

Target: scaffold0583; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 408
Target Start/End: Original strand, 7379 - 7445
Alignment:
Q  342 ccccttcgaaagaaaattggaatatcatggttcgagtcattcaactttggtttgttagggatatgaa 408  Q
    ||||||| |||||||| |||||||||| |||||||||| |||  ||||||||||| || ||||||||    
T  7379 ccccttccaaagaaaactggaatatcagggttcgagtcgttcgcctttggtttgtgagagatatgaa 7445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 408
Target Start/End: Original strand, 45116961 - 45117019
Alignment:
Q  350 aaagaaaattggaatatcatggttcgagtcattcaactttggtttgttagggatatgaa 408  Q
    |||||||| | ||||||||  |||||||||||||  ||||||||||| |||||||||||    
T  45116961 aaagaaaactagaatatcagagttcgagtcattcgtctttggtttgtgagggatatgaa 45117019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University