View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_2 (Length: 649)
Name: NF17574_low_2
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 600; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 1 - 635
Target Start/End: Complemental strand, 32484720 - 32484085
Alignment:
| Q |
1 |
actaaaatccccataaaataatgcatcaatgaataaaaagaagacacacactacactaattatattaagctacattaaataatagagccatagaagtcca |
100 |
Q |
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| T |
32484720 |
actaaaatccccataaaataatgcatcaatgaataaaaagaagacacacactacactaattatattaagctacatttaataatagagccatagaagtcca |
32484621 |
T |
|
| Q |
101 |
ttatagagtacacatagaaagaaacaatagctttggctagctagtttttcaaggagaagaagaataaatatagtatttttggacaaagcattgataattt |
200 |
Q |
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| T |
32484620 |
ttatagagtacacatagaaagaaacaatagctttggctagctagtttttcaaggagaagaagaataaatatagtatttttggacaaagcattgataattt |
32484521 |
T |
|
| Q |
201 |
tgcacaaaaatcaaacatccttgatataataatctcattttgttctactacttcaatatgtgtgtcaa-tttacctctactacttggccacaacaacaat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32484520 |
tgcacaaaaatcaaacatccttgatataataatctcattttgttctactacttcaatatgtgtgtcaaatttacctctactacttggccacaacaacaat |
32484421 |
T |
|
| Q |
300 |
gtcatggtcaaatgattgaaacacaaattttggtaaaagagaagtatatatgtgggataatatataccccacgatccccataataaatcctccttcctct |
399 |
Q |
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| T |
32484420 |
gtcatggtcaaatgattgaaacacaaattttggtaaaagagaagtatatatgtgggataatatatacgccatgatccccataataactcctctttcttct |
32484321 |
T |
|
| Q |
400 |
caattttgttttcacgatcttgggcgagggaagaattgcgtaccactagccgtcatgaaggcattaatcggagccgaatacaacgaagaaggatcaacaa |
499 |
Q |
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| T |
32484320 |
caattttgttttcaagatcttgggcgagggaagaattgcgtaccactagccgtcatgaaggcattaatcggagccgaatacaacgaagaaggatcaacaa |
32484221 |
T |
|
| Q |
500 |
gtgcgcccgaagaggcaacaacagtggtatcagagtcggcaattaggttcaacggttgagcaacgccaacaccgcctccaccggaagtctccccaatcat |
599 |
Q |
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| T |
32484220 |
gtgcgcccgaagaggcaacaacagtggtatcagagtcggcaattaggttcaacggttgagcaacgccaacaccgcctccaccggaagtctccccaatcat |
32484121 |
T |
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| Q |
600 |
gtaattactattattataattactattgttgttgct |
635 |
Q |
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| T |
32484120 |
gtaattactattattataattactattgttgttgct |
32484085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 410 - 499
Target Start/End: Complemental strand, 8103092 - 8103003
Alignment:
| Q |
410 |
ttcacgatcttgggcgagggaagaattgcgtaccactagccgtcatgaaggcattaatcggagccgaatacaacgaagaaggatcaacaa |
499 |
Q |
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|||| ||||||||| | |||||||||||||||||||||| | |||||||| ||||| ||||| | |||||| |||||||||||||||| |
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| T |
8103092 |
ttcaagatcttgggtgggggaagaattgcgtaccactagaaggcatgaaggtattaagtggagctggatacaaagaagaaggatcaacaa |
8103003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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