View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_20 (Length: 425)
Name: NF17574_low_20
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_20 |
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| [»] scaffold0127 (1 HSPs) |
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| [»] scaffold0572 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 31966517 - 31966203
Alignment:
| Q |
18 |
aatacaatccaagagaaatttgctccaatgtagtatgcatagtagtaaaatgaatttgtagaaaaattatcgccttccaaaatcgttgttatataatatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31966517 |
aatacaatccaagagaaatttgctccaatgtagtatgcatagtagtaaaatgaatttgtagaaaaattatcgccttccaaaatcgttgttatataatatg |
31966418 |
T |
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| Q |
118 |
cagcagttccatatagttgacccaatgaaacggcaaattgaagtatatagctgtatgatttcccagtagctattgcatatctgtcatacatttagaaaac |
217 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31966417 |
cagcagttccgtatagttgatccaatgaaacggcaaattgaagtatatagctgtatgatttcccagtagctattgcatatctgtcatacatttagaaaac |
31966318 |
T |
|
| Q |
218 |
acaaacaatgatattagaaataataaatcaaagaagataaaacataaattggctagtgttgcatagaccaaatacaaagtacaaataaaacatacacaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31966317 |
acaaacaatgatattagaaataataaatcaaagaagataaaacataaattggctagtgttgcatagaccaaatacaaagtacaaataaaacatacacaat |
31966218 |
T |
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| Q |
318 |
gcggacatcacaata |
332 |
Q |
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||||||||||||||| |
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| T |
31966217 |
gcggacatcacaata |
31966203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 21 - 267
Target Start/End: Complemental strand, 31959524 - 31959281
Alignment:
| Q |
21 |
acaatccaagagaaatttgctccaatgtagtatgcatagtagtaaaatgaatttgtagaaaaattatcgccttccaaaatcgttgttatataatatgcag |
120 |
Q |
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| T |
31959524 |
acaatccaagagaaatttgctccaatgtaatatgcatagtagtaaaatgaatttgtagaaaaattatcgccttccaaaatcgctgttatataatatgttg |
31959425 |
T |
|
| Q |
121 |
cagttccatatagttgacccaatgaaacggcaaattgaagtatatagctgtatgatttcccagtagctattgcatatctgtcatacatttagaaaacaca |
220 |
Q |
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||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
31959424 |
cagttccatatagctgacccaatgaaacggcaaattgaaggatgtagctgtatgatttcccagtagctattgcatatctgtcatacattaagaaaataca |
31959325 |
T |
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| Q |
221 |
aacaatgatattagaaataataaatcaaagaagataaaacataaatt |
267 |
Q |
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|||| ||| |||| |||| | |||||| ||||||||||||||||| |
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| T |
31959324 |
aacagtgagattaaaaatgaaaaatca---aagataaaacataaatt |
31959281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 135 - 257
Target Start/End: Original strand, 20981688 - 20981811
Alignment:
| Q |
135 |
tgacccaatgaaacggcaaattgaagtatatagctgtatgatttcccagtagctattgcatatctgtcatacat-ttagaaaacacaaacaatgatatta |
233 |
Q |
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|||||||| |||| ||||| ||||||||| || || |||||||||| |||||||||||||||| |||||| ||| ||||||||||||||| ||| |||| |
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| T |
20981688 |
tgacccaaagaaatggcaagttgaagtatgtaactctatgatttcctagtagctattgcatatttgtcatccatattagaaaacacaaactgtgagatta |
20981787 |
T |
|
| Q |
234 |
gaaataataaatcaaagaagataa |
257 |
Q |
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|||| |||| ||||||||||||| |
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| T |
20981788 |
aaaatgataattcaaagaagataa |
20981811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 20971281 - 20971348
Alignment:
| Q |
137 |
acccaatgaaacggcaaattgaagtatatagctgtatgatttcccagtagctattgcatatctgtcat |
204 |
Q |
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|||||| |||||||||||||||||||| || |||||||||||| |||||||||||||||| |||||| |
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| T |
20971281 |
acccaaagaaacggcaaattgaagtatgtatatgtatgatttcctagtagctattgcatatttgtcat |
20971348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 20973509 - 20973566
Alignment:
| Q |
135 |
tgacccaatgaaacggcaaattgaagtatatagctgtatgatttcccagtagctattg |
192 |
Q |
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|||||||| ||||| ||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
20973509 |
tgacccaaagaaacaacaaattgaagtatgtagctgtatgatttcctagtagctattg |
20973566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 30457 - 30371
Alignment:
| Q |
137 |
acccaatgaaacggcaaattgaagtatatagctgtatgatttcccagtagctattgcatatctgtcatacat-ttagaaaacacaaa |
222 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||| ||| |||||||| ||||| |
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| T |
30457 |
acccaaagaaacggcaaattgaagtatatatatgtatgatttcctagtagctattgcatatttgtcatccatattagaaaaaacaaa |
30371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 41403878 - 41403964
Alignment:
| Q |
137 |
acccaatgaaacggcaaattgaagtatatagctgtatgatttcccagtagctattgcatatctgtcatacat-ttagaaaacacaaa |
222 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||| ||| |||||||| ||||| |
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| T |
41403878 |
acccaaagaaacggcaaattgaagtatatatatgtatgatttcctagtagctattgcatatttgtcatccatattagaaaaaacaaa |
41403964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0572 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 7135 - 7215
Alignment:
| Q |
137 |
acccaatgaaacggcaaattgaagtatatagctgtatgatttcccagtagctattgcatatctgtcatacat-ttagaaaa |
216 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||| ||| |||||||| |
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| T |
7135 |
acccaaagaaacggcaaattgaagtatatatatgtatgatttcctagtagctattgcatatttgtcatccatattagaaaa |
7215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 149 - 267
Target Start/End: Complemental strand, 13445892 - 13445768
Alignment:
| Q |
149 |
ggcaaattgaagtatatagctgtatgatttcccagtagctattgcatatctgtcatacat-ttagaaaacacaaacaatgatatta-----gaaataata |
242 |
Q |
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||||||||||||||| ||||||||||||||| | |||| ||| |||||||||| || || || ||||||||||||||||| |||| |||| |||| |
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| T |
13445892 |
ggcaaattgaagtatgtagctgtatgatttcacggtagttatcgcatatctgttatttatatttgaaaacacaaacaatgagattaaaaatgaaagaata |
13445793 |
T |
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| Q |
243 |
aatcaaagaagataaaacataaatt |
267 |
Q |
| |
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||| |||| |||||||||||||||| |
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| T |
13445792 |
aataaaagtagataaaacataaatt |
13445768 |
T |
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