View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_23 (Length: 407)
Name: NF17574_low_23
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 134 - 394
Target Start/End: Complemental strand, 42991533 - 42991273
Alignment:
| Q |
134 |
ctcgcttgatatttgaagttaaattttgatgatgtgacaaatgagacgtttatgtaacaattgaattaatgtcttgcgtttacaaatcacaaatcaactt |
233 |
Q |
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| T |
42991533 |
ctcgcttgatatttgaagttaaattttgatgatgtgacaaataagatgtttatgtaacaattgaattaatgtcttgcgtttacaaatcacaaatcaactt |
42991434 |
T |
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| Q |
234 |
taagtgactagttttacataaaatggtgaaccaataatcaaattccaaagtgtcaatatagttagtatcgaattgtgtgtttctaaacattttattttta |
333 |
Q |
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| T |
42991433 |
taagtgactagttttacataaaatggtgaaccaataatcaaattccaaagtgtcaatatagttagtatcgaattgtgtgtttttaaacattttattttta |
42991334 |
T |
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| Q |
334 |
ttcttctcttactatcacaatcttatagggtatacaccaaatattttccataacaatattg |
394 |
Q |
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| T |
42991333 |
ttcttctcttactatcacaatcttatagggtatacaccaaatattttccataacaatattg |
42991273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 42991666 - 42991605
Alignment:
| Q |
1 |
aaaaataggtccaaatacaatattggtacatttacaatattggtccaaatacttcatgtaac |
62 |
Q |
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| T |
42991666 |
aaaaataggtccaaatacaatattggtacatttacaatattggtccaaatacttcatgtaac |
42991605 |
T |
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