View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_26 (Length: 365)
Name: NF17574_low_26
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 10 - 349
Target Start/End: Original strand, 29784511 - 29784855
Alignment:
| Q |
10 |
attatactaatgaagctaacagaaataccccaagaatctgaagcagcctagttatt---tatacataaaattgttagatacttaacccattaatctaatt |
106 |
Q |
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| T |
29784511 |
attatgctaatgaagctaacagaaataccccaagaatctgaagcagcctagttattgattatgcacaaaagggttagatacttaacc-attaatctaatt |
29784609 |
T |
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| Q |
107 |
ttgtattcaatttaaatttcattgaaaattcagctcactataaccaaaataaacatattagt---actttttacctcaatggttcccacaacatactcag |
203 |
Q |
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| T |
29784610 |
ttgcattcaatttaaatgtcattgaaaattcagctcattataaccaaaataaacatattagtagtactttttacctcaatggttcccacaacatactcag |
29784709 |
T |
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| Q |
204 |
aaagcacagatatgaccaatgtcatacccaccaaccaactaaatgcactccaaaatcctatcactgctttttcatcatcttcatcatctacctgaaaatc |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29784710 |
aaagcacagatatgaccaatgtcatacccaccaaccaactaaatgcactccaaaatcctatcactgctttttcatcatcttcatcatctacctgaaaatc |
29784809 |
T |
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| Q |
304 |
aaaccccatacataatttaagtggatttaattcatatacactttgt |
349 |
Q |
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| T |
29784810 |
aaaccccatacataatttaagtggatttaattcatatacactttgt |
29784855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 113 - 288
Target Start/End: Original strand, 21906208 - 21906389
Alignment:
| Q |
113 |
tcaatttaaatttcattgaaaattcagctcactataaccaaaataaacatatta------gtactttttacctcaatggttcccacaacatactcagaaa |
206 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
21906208 |
tcaatttaaatgtcattgaaaattcagctcactataaccaaaataaacatatttattagtgtactctttacctcaatggttcccacaacatactcagaaa |
21906307 |
T |
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| Q |
207 |
gcacagatatgaccaatgtcatacccaccaaccaactaaatgcactccaaaatcctatcactgctttttcatcatcttcatc |
288 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
21906308 |
gcacagatatcaccaatgtcatacccaccaaccaactaaatgcactccaaaatcctatcacttctttttcatcatcttcatc |
21906389 |
T |
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