View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_29 (Length: 362)
Name: NF17574_low_29
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 9e-95; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 31362048 - 31361814
Alignment:
| Q |
19 |
aatgaacaggttgcattatcttcaaattatgtatgtaat-----tctcacacttttcctaacattcaaattaaaaatattattaatcatgttttatatca |
113 |
Q |
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| T |
31362048 |
aatgaacaggttgcattatcttcaaattatgtatgtaatataattctcacacttttcctgacatccaaattaaaaatattattaatcatgttttatatca |
31361949 |
T |
|
| Q |
114 |
tctatcacaggtatcaatatattattttgcatgacaaactctttctctccgtctattacagtgaactctctcgcaattacttgagcggtccaattcctaa |
213 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | | ||||||||||||||| |
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| T |
31361948 |
tctatcacaggtatcaat-tattattttgcatgacaaactctttctctccgtctattacagtgaactccctcgcaattaccttaacggtccaattcctaa |
31361850 |
T |
|
| Q |
214 |
agcatggggctccatgacaaatcttcgtgaaatgta |
249 |
Q |
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|| ||||||||||||||||||||||||| ||||||| |
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| T |
31361849 |
agaatggggctccatgacaaatcttcgtcaaatgta |
31361814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 31417669 - 31417883
Alignment:
| Q |
21 |
tgaacaggttgcattatcttcaaattatgtatgtaattctcacacttttcctaacattcaaattaaaaatattattaatcatgttttatatcatctatca |
120 |
Q |
| |
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|||| ||||||| ||| |||||| ||||||| ||||||| | ||||| ||| | || |||||| | ||||||||| | | |||||||||| || |||| |
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| T |
31417669 |
tgaataggttgcgttaccttcaagttatgtacgtaattcctaaactttccctcatatccaaattcacaatattattgaacttgttttatattttcaatca |
31417768 |
T |
|
| Q |
121 |
caggtatcaatatattattttgcatgacaaactctttctctccgtctattacagtgaactctctcgcaattacttgagcggtccaattcctaaagcatgg |
220 |
Q |
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| T |
31417769 |
cttgtatctatatattattttgcatgacaaactcctactctccctctattacagtgacctagctcgcaataacttgaaaggtccgattcctaaagaatgg |
31417868 |
T |
|
| Q |
221 |
ggctccatgacaaat |
235 |
Q |
| |
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|||||| |||||||| |
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| T |
31417869 |
ggctccttgacaaat |
31417883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 31294357 - 31294253
Alignment:
| Q |
130 |
atatattattttgcatgacaaactctttctctccgtct----attacagtgaactctctcgcaattacttgagcggtccaattcctaaagcatggggctc |
225 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||| |||||||||| |||||||||||||||||| |||| |||||||||||| ||||||||| |
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| T |
31294357 |
atatattattttgcatgacacactctttctctccctctctcaattacagtgacttctctcgcaattacttgaacggtacaattcctaaagaatggggctc |
31294258 |
T |
|
| Q |
226 |
catga |
230 |
Q |
| |
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||||| |
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|
| T |
31294257 |
catga |
31294253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 25 - 230
Target Start/End: Complemental strand, 31308893 - 31308688
Alignment:
| Q |
25 |
caggttgcattatcttcaaattatgtatgtaattctcacacttttcctaacattcaaattaaaaatattattaatcatgttttatatcatctatcacagg |
124 |
Q |
| |
|
|||||||||||| |||| || |||||||||||||| | || | ||| |||| |||||| | ||||| ||| | | ||||||||||| | |||||| | |
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| T |
31308893 |
caggttgcattaccttcgaactatgtatgtaattcctaaacagtaccttacatccaaatttacaatataattgaacttgttttatatcctagatcacatg |
31308794 |
T |
|
| Q |
125 |
tatcaatatattattttgcatgacaaactctttctctccgtctattacagtgaactctctcgcaattacttgagcggtccaattcctaaagcatggggct |
224 |
Q |
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||| |||||||||||||| || ||| |||||||| | |||||||||| || ||||||||||||||||||| ||| ||||||| ||| |||||||| |
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| T |
31308793 |
catctatatattattttgcttggcaattactttctcttcctctattacagcgacctctctcgcaattacttgaatggtacaattccgaaacaatggggct |
31308694 |
T |
|
| Q |
225 |
ccatga |
230 |
Q |
| |
|
|||||| |
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|
| T |
31308693 |
ccatga |
31308688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 21 - 230
Target Start/End: Complemental strand, 31388738 - 31388531
Alignment:
| Q |
21 |
tgaacaggttgcattatcttcaaattatgtatgtaattctcacacttttcct--aacattcaaattaaaaatattattaatcatgttttatatcatctat |
118 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||| |||||| ||||||||| || || ||| || | ||| | | | | |||||||| | || || |
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| T |
31388738 |
tgaacaggttgcgttaccttcaaattatgtatgtatttctcaaacttttcctcaaatatctaaaacaacattatgactgaacttgttttatcttttcaat |
31388639 |
T |
|
| Q |
119 |
cacaggtatcaatatattattttgcatgacaaactctttctctccgtctattacagtgaactctctcgcaattacttgagcggtccaattcctaaagcat |
218 |
Q |
| |
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|||| |||| |||||||||||||||||||||||| |||||| | ||||||||| ||| ||||||| ||||||| ||| |||||||||||| || |
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| T |
31388638 |
cacatttatctatatattattttgcatgacaaacttcttctcttc----cttacagtgacctcactcgcaactacttgaatggtacaattcctaaagaat |
31388543 |
T |
|
| Q |
219 |
ggggctccatga |
230 |
Q |
| |
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|||| ||||||| |
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| T |
31388542 |
ggggttccatga |
31388531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 248 - 348
Target Start/End: Complemental strand, 31361778 - 31361680
Alignment:
| Q |
248 |
tagattgttctgcgtattatacgatatattgacatatgagtctgattatacattctttatagggaattacattcatagtttgaagtaataacatgtttct |
347 |
Q |
| |
|
|||||||||||| ||||||| ||||| | |||| ||||||| |||||| |||||||||| ||| ||||||||||| |||||| |||||||||||||| |
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| T |
31361778 |
tagattgttctgaatattatatgatattt--acatctgagtcttattatagattctttataaggatttacattcataacttgaagcaataacatgtttct |
31361681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 31376355 - 31376255
Alignment:
| Q |
130 |
atatattattttgcatgacaaactctttctctccgtctattacagtgaactctctcgcaattacttgagcggtccaattcctaaagcatggggctccatg |
229 |
Q |
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|
|||||||||||||| ||||||||| |||||| | | ||||||||||| ||| ||||||| ||| | | ||| |||||||||||| ||||||||||||| |
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|
| T |
31376355 |
atatattattttgcttgacaaacttcttctcttcctttattacagtgacctcactcgcaactaccttggtggtacaattcctaaagaatggggctccatg |
31376256 |
T |
|
| Q |
230 |
a |
230 |
Q |
| |
|
| |
|
|
| T |
31376255 |
a |
31376255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 31257209 - 31257120
Alignment:
| Q |
145 |
tgacaaactctttctctccgtct----attacagtgaactctctcgcaattacttgagcggtccaattcctaaagcatggggctccatga |
230 |
Q |
| |
|
||||||||||||| ||||| ||| ||||||| || ||||||||||||| ||||| |||| | |||||||||| |||||||||||||| |
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| T |
31257209 |
tgacaaactctttatctccctctctatattacagcgacctctctcgcaatttcttgaacggtacgattcctaaagaatggggctccatga |
31257120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 31283313 - 31283114
Alignment:
| Q |
21 |
tgaacaggttgcattatcttcaaattatgtatgtaattctcacacttttcctaacattcaaattaaaaatattattaatcatgttttatatcatctatca |
120 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||| ||| || ||||| | |||| |||||||| ||| | || || ||||||||| | |||| |
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| T |
31283313 |
tgaacaggttgcgttaccttcaaattatgtatgtatttcccaaactttctatcacatccaaattaacaatgt-----attat-ttttatatctacaatca |
31283220 |
T |
|
| Q |
121 |
caggtatcaatatattattttgcatgacaaactctttctctcc----gtctattacagtgaactctctcgcaattacttgagcggtccaattcctaaagc |
216 |
Q |
| |
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|| ||||| | |||||||||||| |||||||||| |||||||| ||||||||||||| ||| ||||||| ||| || | || |||||| ||||| |
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|
| T |
31283219 |
catgtatctaaatattattttgcttgacaaactccttctctccctctctctattacagtgacctcactcgcaactacctgggtggcacaattcttaaaga |
31283120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 31257305 - 31257258
Alignment:
| Q |
25 |
caggttgcattatcttcaaattatgtatgtaattctcacacttttcct |
72 |
Q |
| |
|
||||||||| || |||||| |||||||||||||||||| ||||||||| |
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|
| T |
31257305 |
caggttgcaataccttcaatttatgtatgtaattctcaaacttttcct |
31257258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 36214847 - 36214783
Alignment:
| Q |
166 |
ctattacagtgaactctctcgcaattacttgagcggtccaattcctaaagcatggggctccatga |
230 |
Q |
| |
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|||||||||||| || || ||||||||||||| ||| |||||||| | | |||||||||||||| |
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|
| T |
36214847 |
ctattacagtgacctttcccgcaattacttgaatggtacaattcctgatgaatggggctccatga |
36214783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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