View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_31 (Length: 354)
Name: NF17574_low_31
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 12295512 - 12295191
Alignment:
| Q |
18 |
atataactgtcctatttatagtgtgcaattgtaccaactaattgctaattaatttcagactaactaatttatactaaaatagagttaacttactctaaca |
117 |
Q |
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| T |
12295512 |
atataactgtcctatttatagtgtgcaattgtacaaactaattgctaattaatttcagaataactaatttatactaaaatagagttaacttactctaaca |
12295413 |
T |
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| Q |
118 |
tttaatttcaggaggatctttactgcccacgtcctctagttcaatatatggtatgggcgttgctttatcatgttggagagcctttgcttgaattactggc |
217 |
Q |
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| T |
12295412 |
tttaatttcaggaggatctttactgcccacgtcctctagttcaatatatggtatgggggttgctttatcatgttggagagcctttgc-tgaattactggc |
12295314 |
T |
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| Q |
218 |
ctttttcgaagcttagacatagttcattacaaattgcaataaatcatatacgttatgaggatgaaaatggaagatatattggggttggaagtgcagtgaa |
317 |
Q |
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| T |
12295313 |
ctttttcgaagcttagacatagttcattacaaattgcaataaatcatatacgttatgaggatgaaaatggaagatatattggggttggaagcgcagtgaa |
12295214 |
T |
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| Q |
318 |
ggtaatttagaaataatactata |
340 |
Q |
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| T |
12295213 |
ggtaatttagaaataatactata |
12295191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 281
Target Start/End: Complemental strand, 35183602 - 35183443
Alignment:
| Q |
121 |
aatttcaggaggatctttactgcccacgtcctctagttcaatatatggtatgggcgttgctttatcatgttggagagcctttgcttgaattactggcctt |
220 |
Q |
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|||||||||||||||| |||| ||||| |||| | ||||| ||||| |||||| || |||||||| || ||||||||||| | |||||| |||||||| |
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| T |
35183602 |
aatttcaggaggatctgtactacccacatcctatgattcaagatatgttatggggatttctttatcacgtgggagagccttttc-tgaattgctggcctt |
35183504 |
T |
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| Q |
221 |
tttcgaagcttagacatagttcattacaaattgcaataaatcatatacgttatgaggatga |
281 |
Q |
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| | ||||||||||| | ||||| |||||||||| |||||| | |||| |||||||| |
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| T |
35183503 |
tcaccaagcttagacagaaggcattagaaattgcaattaatcatgtgggttacgaggatga |
35183443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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