View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_32 (Length: 353)
Name: NF17574_low_32
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_32 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 353
Target Start/End: Complemental strand, 46865409 - 46865078
Alignment:
| Q |
20 |
ttgatctcccaataataaactgaaatttaatcgtttattaaaggaaagagatgtaccctgtttcaagtcatgtggtcacttggctaccaaccaactaagg |
119 |
Q |
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| T |
46865409 |
ttgatctcccaataataaactgaaatttaatcggttattaaaggaaagagatgtaccctgtttcaagtcatgtggtcacttggctaccaaccaactaagg |
46865310 |
T |
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| Q |
120 |
aatagtccaaacttgttaggacacctatgcctatttccaccnnnnnnnnttcaaccaggaatgtacaggtgtctcatgaagaagggagtgacaggaactg |
219 |
Q |
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| T |
46865309 |
aatagtccaaacttgttaggacacctatgcctatttccaccaaaaaac--tcaaccaggaatgtacaggtgtctcatgaagaagggagtgacaggaactg |
46865212 |
T |
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| Q |
220 |
tcaattatagtccattttagttttttacattgcccattcaaaaaggcaccaaaaactgttttataatagacgacagcatattgttcttgttacttattat |
319 |
Q |
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| T |
46865211 |
tcaattatagtccattttagttttttacattgcccattcaaaaaggcaccaaaaactgttttataatagacgacagcatattgttcttgttacttattat |
46865112 |
T |
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| Q |
320 |
tagggccaacaaaatgggggagaaggcacgtgtt |
353 |
Q |
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| T |
46865111 |
tagggccaacaaaatgggggagaaggcacgtgtt |
46865078 |
T |
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