View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_33 (Length: 351)
Name: NF17574_low_33
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 336
Target Start/End: Original strand, 36312745 - 36313070
Alignment:
| Q |
11 |
acatcatcagcagttactttctccaacaaaccttcaggtgatttatcagcctttgttacaacagctaatgtcctcaaaccagttttatcaaccatctgtg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36312745 |
acatcatcagcagttactttctccaacaaaccttcaggtgatttatcagcctttgttacaacagctaatgtcctcaaaccagttttatcaaccatctgtg |
36312844 |
T |
|
| Q |
111 |
acatcctaatagactcacaagtactaaaatcaacagtagcagaaagaacattcaggataatgctctcttcaggagttatatagtccatgataatatcctt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36312845 |
acatcctaatagactcacaagtactaaaatcaacagtagcagaaagaacattcaggataatgctctcttcaggagttatatagtccatgataatatcctt |
36312944 |
T |
|
| Q |
211 |
aatctgatcataaatgttatcaggttgaccatgaacaggaacacgagttatacctggaagatcaaccattgtaaggtcaggaacgccattcttcttcaca |
310 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36312945 |
aatctgatcataaatgttatcaggttgaccatgaacaggaacacgagttatacctggaagatcaaccattgtaaggtcaggaacgccattcttcttcaca |
36313044 |
T |
|
| Q |
311 |
atcaaagtcagtggagtgtttgaaat |
336 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
36313045 |
atcaaagtcagtggagtgtttgaaat |
36313070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 11 - 336
Target Start/End: Original strand, 36290262 - 36290587
Alignment:
| Q |
11 |
acatcatcagcagttactttctccaacaaaccttcaggtgatttatcagcctttgttacaacagctaatgtcctcaaaccagttttatcaaccatctgtg |
110 |
Q |
| |
|
||||||||||| || || ||||||||||| |||||||| |||||||| || ||||| |||||||| | ||||||||||||||||||||||||||| |||| |
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| T |
36290262 |
acatcatcagcggtaaccttctccaacaatccttcaggagatttatcggcttttgtgacaacagcaagtgtcctcaaaccagttttatcaaccatttgtg |
36290361 |
T |
|
| Q |
111 |
acatcctaatagactcacaagtactaaaatcaacagtagcagaaagaacattcaggataatgctctcttcaggagttatatagtccatgataatatcctt |
210 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||| || ||||||||||||||||| ||||| |||||||| || |
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|
| T |
36290362 |
acatcctaatagactcacaagttgtaaaatcaacagtagcagaaaggacattcgagataatactttcttcaggagttatatactccataataatatcttt |
36290461 |
T |
|
| Q |
211 |
aatctgatcataaatgttatcaggttgaccatgaacaggaacacgagttatacctggaagatcaaccattgtaaggtcaggaacgccattcttcttcaca |
310 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||| |||||||| || |||||||| ||| |
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|
| T |
36290462 |
aatctgatcatagatattatcaggttgaccatgaacaggtacacgtgtgatacctggaagatcaaccatggtaagatcaggaacaccgttcttcttgaca |
36290561 |
T |
|
| Q |
311 |
atcaaagtcagtggagtgtttgaaat |
336 |
Q |
| |
|
||||| |||| |||||||| ||||| |
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|
| T |
36290562 |
atcaatgtcaaaggagtgttggaaat |
36290587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 180
Target Start/End: Original strand, 33579676 - 33579845
Alignment:
| Q |
11 |
acatcatcagcagttactttctccaacaaaccttcaggtgatttatcagcctttgttacaacagctaatgtcctcaaaccagttttatcaaccatctgtg |
110 |
Q |
| |
|
|||||||||||||| |||||||| ||||| |||||| | ||||||| |||||||| | |||| | || ||||||||||||||||||||| | | || |
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|
| T |
33579676 |
acatcatcagcagtaactttctcaaacaatccttcaagagatttatgagcctttgaagtagcagcaagtgacctcaaaccagttttatcaacagtttctg |
33579775 |
T |
|
| Q |
111 |
acatcctaatagactcacaagtactaaaatcaacagtagcagaaagaacattcaggataatgctctcttc |
180 |
Q |
| |
|
||||||| | |||||||||||| ||||||| |||||||||||||||||||| ||||||||| ||||| |
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|
| T |
33579776 |
acatccttaatgactcacaagtagagaaatcaatagtagcagaaagaacattcaagataatgctttcttc |
33579845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 180
Target Start/End: Complemental strand, 15997322 - 15997153
Alignment:
| Q |
11 |
acatcatcagcagttactttctccaacaaaccttcaggtgatttatcagcctttgttacaacagctaatgtcctcaaaccagttttatcaaccatctgtg |
110 |
Q |
| |
|
|||||||||||||| |||||||| ||||| |||||| | ||||||| |||||||| | |||| | || ||||||| ||||||||||||| | | || |
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|
| T |
15997322 |
acatcatcagcagtaactttctcaaacaatccttcaagagatttatgagcctttgaagtagcagcaagtgacctcaaatcagttttatcaacagtttctg |
15997223 |
T |
|
| Q |
111 |
acatcctaatagactcacaagtactaaaatcaacagtagcagaaagaacattcaggataatgctctcttc |
180 |
Q |
| |
|
||||||| | |||||||||||| ||||||| |||||||||||||||||||| ||||||||| ||||| |
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|
| T |
15997222 |
acatccttaatgactcacaagtagagaaatcaatagtagcagaaagaacattcaagataatgctttcttc |
15997153 |
T |
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