View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_34 (Length: 350)
Name: NF17574_low_34
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_34 |
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| [»] scaffold1252 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 52 - 341
Target Start/End: Original strand, 15361197 - 15361487
Alignment:
| Q |
52 |
caaatagtaagaaataatgatgacatgataacttgttagaatcacactaagatacatcgtaatgttctaaaaactttaattttacaaaagttattgagtg |
151 |
Q |
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|||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15361197 |
caaatagtaagagataacgatgccatgataacttgttagaatcacactaagatacatcgtaatgttctaaaaactttaattttacaaaagttattgagtg |
15361296 |
T |
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| Q |
152 |
ttttgattgaagtttgcatcatatttttcacttttcaatacacttttaatttgatgtgatttttgtgaaactataattgcaagtttctacacagtcgtgc |
251 |
Q |
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| T |
15361297 |
ttttgattggagtttgcatcatatttttcacttttcaatacacttttaatttgatgtgatttttgtgaaactataattgcaagtttctacacagtcgtgc |
15361396 |
T |
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| Q |
252 |
gtttgggcccatttgaacgccgtcccaagcatgcaataagtcattcaaatagaaatcggaaaaaa-ttaacctaaaacgttgaagaataat |
341 |
Q |
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| T |
15361397 |
gtttgggcacatttggacgccgtcccaagcatgcaataagtcattcaaatagaaatcgaaaaaaatttaacctaaaacgttgaagaataat |
15361487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 15361142 - 15361179
Alignment:
| Q |
1 |
tgagcagggatttgatttttaataaaatttgctgattc |
38 |
Q |
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| T |
15361142 |
tgagcagggatttgatttttaataaaatttgttgattc |
15361179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 25504551 - 25504518
Alignment:
| Q |
1 |
tgagcagggatttgatttttaataaaatttgctg |
34 |
Q |
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| T |
25504551 |
tgagcagggatctgatttttaataaaatttgctg |
25504518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 24257318 - 24257272
Alignment:
| Q |
209 |
gatttttgtgaaactataattgcaagtttctacacagtcgtgcgttt |
255 |
Q |
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| T |
24257318 |
gatttttgtgaaactacaattgcaagcttctacacagtcgtgcgttt |
24257272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8843776 - 8843739
Alignment:
| Q |
1 |
tgagcagggatttgatttttaataaaatttgctgattc |
38 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |
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| T |
8843776 |
tgagaagggatttgatttttaataaaatttgctgattc |
8843739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 21983537 - 21983500
Alignment:
| Q |
1 |
tgagcagggatttgatttttaataaaatttgctgattc |
38 |
Q |
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| T |
21983537 |
tgagcagggatctgatttttaataaaatttgctgattc |
21983500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 8731356 - 8731389
Alignment:
| Q |
1 |
tgagcagggatttgatttttaataaaatttgctg |
34 |
Q |
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| T |
8731356 |
tgagcagggatctgatttttaataaaatttgctg |
8731389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1252 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1252
Description:
Target: scaffold1252; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 880 - 912
Alignment:
| Q |
5 |
cagggatttgatttttaataaaatttgctgatt |
37 |
Q |
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| T |
880 |
cagggatctgatttttaataaaatttgctgatt |
912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 16180519 - 16180483
Alignment:
| Q |
1 |
tgagcagggatttgatttttaataaaatttgctgatt |
37 |
Q |
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||||||| ||| ||||||||||||||||||||||||| |
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| T |
16180519 |
tgagcagagatctgatttttaataaaatttgctgatt |
16180483 |
T |
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