View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_35 (Length: 337)
Name: NF17574_low_35
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_35 |
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| [»] chr4 (2 HSPs) |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 12 - 337
Target Start/End: Original strand, 18046967 - 18047292
Alignment:
| Q |
12 |
atgaatgcaagcaatcgtttgcttcagtcagatgttttttccttctcaggcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18046967 |
atgaatgcaagcaatcgtttgcttcagtcagatgttttttccttctcaggcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaa |
18047066 |
T |
|
| Q |
112 |
tcccaaatagtattgaagaaatgaagcatttaagatatattgatctatcacggaacaatgtacttataaatcttcctccgaccattactagcctactgaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18047067 |
tcccaaatagtattgaagaaatgaagcatttaagatatattgatctatcacggaacaatgtacttaaaaatcttcctccgaccattactagcctactgaa |
18047166 |
T |
|
| Q |
212 |
cttgcaaactctaaaactttctgattgttctaagcttgaaatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagaga |
311 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18047167 |
cttgcaaactctaaaacttgctgattgttctaagcttgaaatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagaga |
18047266 |
T |
|
| Q |
312 |
ttgacatgtatgccacgggggctagg |
337 |
Q |
| |
|
|||| ||||||||||||||||||||| |
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| T |
18047267 |
ttgagatgtatgccacgggggctagg |
18047292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 15 - 337
Target Start/End: Complemental strand, 18034183 - 18033861
Alignment:
| Q |
15 |
aatgcaagcaatcgtttgcttcagtcagatgttttttccttctcaggcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaatcc |
114 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18034183 |
aatgcaagcaatcgtttgcttcagtcagatgatttttccttctcaggcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaatcc |
18034084 |
T |
|
| Q |
115 |
caaatagtattgaagaaatgaagcatttaagatatattgatctatcacggaacaatgtacttataaatcttcctccgaccattactagcctactgaactt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
18034083 |
caaatagtattgaagaaatgaagcatttaagatatattgatctatcacggaacaatgtacttaaaaatcttcctccgaccattactagcctactgaactt |
18033984 |
T |
|
| Q |
215 |
gcaaactctaaaactttctgattgttctaagcttgaaatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagagattg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18033983 |
gcaaactctaaaactttctgattgttctaagcttgaaatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagagtttg |
18033884 |
T |
|
| Q |
315 |
acatgtatgccacgggggctagg |
337 |
Q |
| |
|
|||||||||||||| |||||||| |
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| T |
18033883 |
acatgtatgccacgtgggctagg |
18033861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 12 - 337
Target Start/End: Complemental strand, 4398359 - 4398034
Alignment:
| Q |
12 |
atgaatgcaagcaatcgtttgcttcagtcagatgttttttccttctcaggcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4398359 |
atgaatgcaagcaatcgtttgcttcagtcagatgttttttccttctcaggcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaa |
4398260 |
T |
|
| Q |
112 |
tcccaaatagtattgaagaaatgaagcatttaagatatattgatctatcacggaacaatgtacttataaatcttcctccgaccattactagcctactgaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
4398259 |
tcccaaatagtattgaagaaatgaagcatttaagatatattgatctatcacggaacaatgtacttaaaaatcttcctccgaccattactagcctactgaa |
4398160 |
T |
|
| Q |
212 |
cttgcaaactctaaaactttctgattgttctaagcttgaaatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagaga |
311 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4398159 |
cttgcaaactctaaaacttgctgattgttctaagcttgaaatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagaga |
4398060 |
T |
|
| Q |
312 |
ttgacatgtatgccacgggggctagg |
337 |
Q |
| |
|
|||| ||||||||||||||||||||| |
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|
| T |
4398059 |
ttgagatgtatgccacgggggctagg |
4398034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 15 - 337
Target Start/End: Original strand, 4519346 - 4519668
Alignment:
| Q |
15 |
aatgcaagcaatcgtttgcttcagtcagatgttttttccttctcaggcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaatcc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4519346 |
aatgcaagcaatcgtttgcttcagtcagatgatttttccttctcaggcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaatcc |
4519445 |
T |
|
| Q |
115 |
caaatagtattgaagaaatgaagcatttaagatatattgatctatcacggaacaatgtacttataaatcttcctccgaccattactagcctactgaactt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4519446 |
caaatagtattgaagaaatgaagcatttaagatatattgatctatcacggaacaatgtacttaaaaatcttcctccgaccattactagcctactgaactt |
4519545 |
T |
|
| Q |
215 |
gcaaactctaaaactttctgattgttctaagcttgaaatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagagattg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
4519546 |
gcaaactctaaaactttctgattgttctaagcttgaaatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagagtttg |
4519645 |
T |
|
| Q |
315 |
acatgtatgccacgggggctagg |
337 |
Q |
| |
|
|||||||||||||| |||||||| |
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| T |
4519646 |
acatgtatgccacgtgggctagg |
4519668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 12 - 337
Target Start/End: Original strand, 4498283 - 4498608
Alignment:
| Q |
12 |
atgaatgcaagcaatcgtttgcttcagtcagatgttttttccttctcaggcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaa |
111 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4498283 |
atgaatgcaagcaatcgttttcttcagtcagatgttttttccttctcaggcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaa |
4498382 |
T |
|
| Q |
112 |
tcccaaatagtattgaagaaatgaagcatttaagatatattgatctatcacggaacaatgtacttataaatcttcctccgaccattactagcctactgaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4498383 |
tcccaaatagtattgaagaaatgaagcatttaagatatattgatctatcacggaacaatgtacttaaaaatcttcctccgaccattactagcctactgaa |
4498482 |
T |
|
| Q |
212 |
cttgcaaactctaaaactttctgattgttctaagcttgaaatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagaga |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4498483 |
cttgcaaactctaaaactttctgattgttctaagcttgaaatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagagt |
4498582 |
T |
|
| Q |
312 |
ttgacatgtatgccacgggggctagg |
337 |
Q |
| |
|
||||||||||||||| | |||||||| |
|
|
| T |
4498583 |
ttgacatgtatgccatgtgggctagg |
4498608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 14 - 327
Target Start/End: Original strand, 4529533 - 4529846
Alignment:
| Q |
14 |
gaatgcaagcaatcgtttgcttcagtcagatgttttttccttctcaggcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaatc |
113 |
Q |
| |
|
||||||||||||| | ||| ||||||| | ||| ||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| | |||| |
|
|
| T |
4529533 |
gaatgcaagcaattatctgcgtcagtcaaacgttctttccttttcaggcttaaagttcttacgtgtgttgacactttgtggattgaatattctggcaatc |
4529632 |
T |
|
| Q |
114 |
ccaaatagtattgaagaaatgaagcatttaagatatattgatctatcacggaacaatgtacttataaatcttcctccgaccattactagcctactgaact |
213 |
Q |
| |
|
||||||||||||||||| ||||||||| | |||||||||||||||||| || | |||||||| | ||||||| ||| |||||||||||||| |||| |
|
|
| T |
4529633 |
ccaaatagtattgaagagatgaagcatctgagatatattgatctatcaaagagtattgtacttaaagatcttccgccgggcattactagcctacagaacc |
4529732 |
T |
|
| Q |
214 |
tgcaaactctaaaactttctgattgttctaagcttgaaatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagagatt |
313 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||| | |||||| |||||||||||||| |||||||| |||||||| |
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|
| T |
4529733 |
ttcaaactctaaaactttctgattgttctgagctcgaaatattaccagaaaatctcaacaaaagtcttaggcatcttgagttgaatggttgtgagagatt |
4529832 |
T |
|
| Q |
314 |
gacatgtatgccac |
327 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
4529833 |
gagatgtatgccac |
4529846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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