View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_36 (Length: 335)
Name: NF17574_low_36
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 16 - 327
Target Start/End: Original strand, 11605953 - 11606264
Alignment:
| Q |
16 |
aaaagcaaccttgtgaaaagaagaatttttgttgttcccttgtcgatgatcgacaaggcgaagattgtattcatctatagcatcttccatatcttgagca |
115 |
Q |
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| T |
11605953 |
aaaagcaaccttgtgaaaagaagaatttttgttgttcccttgtcgatgatcgacaaggcgaagattgtattcatctatagcatcttccatatcttgagca |
11606052 |
T |
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| Q |
116 |
atatctcttacccttttaacccatactttgagttctggatctttgtcttccaatgcatcatctctcgttaagatggcattgtggcgtttgagttcgtctt |
215 |
Q |
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| T |
11606053 |
atatctcttacccttttaacccatactttgagttcaggatctttgtcttccaatgcatcatctctcgttaagatggcattgtggcgtttgagttcgtctt |
11606152 |
T |
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| Q |
216 |
tgatgtattgaacatcttcacggacccctttttgtagaattacttcttcttgaagtaaccaactcagtttgtccaataaaaatgatactgaactatctgc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11606153 |
tgatgtattgaacatcttcacggacccctttttgtagaattacttcttcttgaagtaaccaactcagtttgtccaataaaaatgatactgaactatctgc |
11606252 |
T |
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| Q |
316 |
cattttcttctc |
327 |
Q |
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|||||||||||| |
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| T |
11606253 |
cattttcttctc |
11606264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 53 - 321
Target Start/End: Complemental strand, 11640074 - 11639806
Alignment:
| Q |
53 |
ccttgtcgatgatcgacaaggcgaagattgtattcatctatagcatcttccatatcttgagcaatatctcttacccttttaacccatactttgagttctg |
152 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
11640074 |
ccttgttgatgatcgacaaggcgaagatagtattcatctatagcatcttccatgtcttgagcaatatctcttactcttttaacccatactttgagttcag |
11639975 |
T |
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| Q |
153 |
gatctttgtcttccaatgcatcatctctcgttaagatggcattgtggcgtttgagttcgtctttgatgtattgaacatcttcacggacccctttttgtag |
252 |
Q |
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| T |
11639974 |
ggtctttgtcttccaatgaatcagctaacatcaagatggacttgtggcgttcaagttcgtctttgatgtattgaacatcttcacggactcctctttgtag |
11639875 |
T |
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| Q |
253 |
aattacttcttcttgaagtaaccaactcagtttgtccaataaaaatgatactgaactatctgccatttt |
321 |
Q |
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| T |
11639874 |
atttacttcctcttgaagtaaccatgttagcttgtccaataaaaatgatactgaactgtctgccatttt |
11639806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 53 - 319
Target Start/End: Complemental strand, 11621583 - 11621317
Alignment:
| Q |
53 |
ccttgtcgatgatcgacaaggcgaagattgtattcatctatagcatcttccatatcttgagcaatatctcttacccttttaacccatactttgagttctg |
152 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||| | |
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| T |
11621583 |
ccttgttgatgatcgacaaggcgaagatagtattcatctatagcatcttccatgtcttgagcaataactctaacccttttaacccatactttgagttcag |
11621484 |
T |
|
| Q |
153 |
gatctttgtcttccaatgcatcatctctcgttaagatggcattgtggcgtttgagttcgtctttgatgtattgaacatcttcacggacccctttttgtag |
252 |
Q |
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| T |
11621483 |
ggtctttgtcttccattgaatcagctgccatcaagatggccttgtggcgttcgagttcgtcgttgatgtattgaacatcttcacggacgcctctttgtag |
11621384 |
T |
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| Q |
253 |
aattacttcttcttgaagtaaccaactcagtttgtccaataaaaatgatactgaactatctgccatt |
319 |
Q |
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| |||| |||||||||||||||||| | || || ||||| ||||||||||||||||| ||||||||| |
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| T |
11621383 |
atttacctcttcttgaagtaaccaagttagcttctccaacaaaaatgatactgaactctctgccatt |
11621317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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