View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_37 (Length: 331)
Name: NF17574_low_37
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 318
Target Start/End: Original strand, 41758233 - 41758532
Alignment:
| Q |
19 |
ttctgagaccaaattcaaaaggtcaacgcaactaagatggaaagttaccaaagttatctcaggtaaacacccaattggttccaataatccaattgctact |
118 |
Q |
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| T |
41758233 |
ttctgagaccaaattcaaaaggtcaacgcaactaagatggaaagttaccaaagttatctcaggtaaacatccaattggttccaataatccaattgctact |
41758332 |
T |
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| Q |
119 |
ttatttattcccaaattgtggatgcgttgaacatttatggatagttgattgataaggcttgtagtgaaggattttatttcctaccaaatgaaatacnnnn |
218 |
Q |
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| T |
41758333 |
ttatttattcccaaattgtggatgcgttgaacatttatggatagttgattgataaggcttgtagtgaaggattttatttcctaccaaatgaaatacaaaa |
41758432 |
T |
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| Q |
219 |
nnnccaacatattagtagaaaaaattgagatatcagcaagaacattgaaaccnnnnnnnccacttaccgtaatgcttctattgtttactaaaaaagcagt |
318 |
Q |
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| T |
41758433 |
aaacaaacatattagtagaaaaaattgagatatcagcaagaacattgaaaccaaaaaaaccacttaccgtaatgcttctattgtttactaaaaaagcagt |
41758532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 41753977 - 41754165
Alignment:
| Q |
18 |
tttctgagaccaaattcaaaaggtcaacgcaactaagatggaaagttaccaaagttatctcaggtaaacacccaattggttccaataatccaattgctac |
117 |
Q |
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| T |
41753977 |
tttctgagaccaaattcaaaaggtcgacgcaactaagatgaaaagttacagcgtttatccgaggtaaacacccgagtggttccaataacgcaattgctac |
41754076 |
T |
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| Q |
118 |
tttatttattcccaaattgtggatgcgttgaacatttatggatagttgattgataaggcttgtagtgaaggattttatttcctaccaaa |
206 |
Q |
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| T |
41754077 |
tttatttattcctaaattgtggatgcgttgaacatttatggatagttgattgataagggttgtagtgaaggattttatctcctaccaaa |
41754165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 41739417 - 41739466
Alignment:
| Q |
83 |
aaacacccaattggttccaataatccaattgctactttatttattcccaa |
132 |
Q |
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| T |
41739417 |
aaacaccctataggttctaataatccaattgctattttatttattcccaa |
41739466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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