View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17574_low_39 (Length: 325)

Name: NF17574_low_39
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17574_low_39
NF17574_low_39
[»] chr2 (9 HSPs)
chr2 (4-306)||(15360816-15361118)
chr2 (8-139)||(2063137-2063269)
chr2 (47-160)||(15126130-15126244)
chr2 (8-136)||(40470651-40470780)
chr2 (8-101)||(25504579-25504670)
chr2 (105-137)||(13699066-13699098)
chr2 (105-137)||(25504689-25504721)
chr2 (102-137)||(7696248-7696283)
chr2 (102-137)||(24308513-24308548)
[»] chr5 (9 HSPs)
chr5 (9-161)||(27713311-27713462)
chr5 (39-158)||(22675034-22675154)
chr5 (22-123)||(4941346-4941446)
chr5 (4-137)||(24071948-24072080)
chr5 (8-101)||(8731237-8731328)
chr5 (105-137)||(8731186-8731218)
chr5 (103-137)||(7682840-7682874)
chr5 (101-137)||(14302202-14302238)
chr5 (101-137)||(30097619-30097655)
[»] chr6 (5 HSPs)
chr6 (54-161)||(13098299-13098406)
chr6 (86-160)||(16180659-16180732)
chr6 (4-101)||(16180543-16180642)
chr6 (102-137)||(32935102-32935137)
chr6 (102-136)||(17278261-17278295)
[»] chr4 (6 HSPs)
chr4 (4-139)||(28967134-28967269)
chr4 (74-140)||(12296442-12296508)
chr4 (74-150)||(46487528-46487604)
chr4 (10-69)||(38930118-38930177)
chr4 (74-138)||(27314451-27314515)
chr4 (102-137)||(43373866-43373901)
[»] scaffold0499 (1 HSPs)
scaffold0499 (54-161)||(6804-6911)
[»] chr7 (7 HSPs)
chr7 (39-142)||(25438412-25438517)
chr7 (54-161)||(48058394-48058503)
chr7 (74-137)||(9107413-9107475)
chr7 (102-137)||(28534288-28534323)
chr7 (102-137)||(23983491-23983526)
chr7 (8-82)||(25438673-25438748)
chr7 (123-161)||(47456819-47456857)
[»] chr1 (6 HSPs)
chr1 (18-161)||(19598882-19599031)
chr1 (74-137)||(16577546-16577608)
chr1 (102-137)||(37200388-37200423)
chr1 (9-60)||(50588964-50589015)
chr1 (4-50)||(17033942-17033988)
chr1 (104-137)||(38548838-38548871)
[»] chr8 (3 HSPs)
chr8 (10-63)||(8862314-8862367)
chr8 (102-136)||(25184919-25184953)
chr8 (102-137)||(30235891-30235926)
[»] chr3 (6 HSPs)
chr3 (8-123)||(47945974-47946090)
chr3 (102-137)||(1652650-1652685)
chr3 (106-137)||(12086528-12086559)
chr3 (102-161)||(25594308-25594366)
chr3 (102-137)||(27399231-27399266)
chr3 (90-138)||(40689505-40689552)
[»] scaffold1384 (1 HSPs)
scaffold1384 (13-63)||(1347-1397)


Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 4 - 306
Target Start/End: Complemental strand, 15361118 - 15360816
Alignment:
Q  4 agataatacaaacgaaaggcgccgtatataaacgaaacacccgaaaaataaacaccataacaacccttacacacaaaacacctagtcaaaccctacctga 103  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15361118 agataatacaaacgaaaggcgccgtatatagacgaaacacccaaaaaataaacaccataacaacccttacacacaaaacacctagtcaaaccctacctga 15361019  T
Q  104 caacacccaccaaaataaacatcaccacctaaaaacataccccttcaccaaaccaccaaacatgcatttagagtgctttacctaatttttaggcaaatta 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15361018 caacacccaccaaaataaacatcaccacctaaaaacataccccttcacgaaaccaccaaacatgcatttagagtgctttacctaatttttaggcaaatta 15360919  T
Q  204 tattatgtgatcatttatgttagatgtatgcactacattaatcttctaagnnnnnnnnnnnnnactaaatggtcatctactccataaaacctgtacaatg 303  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||             |||||||||||||||||||||||||||||||||||||    
T  15360918 tactatgtgatcatttatgttagatgtatgcactaaattaatcttctaagttttttgttttttactaaatggtcatctactccataaaacctgtacaatg 15360819  T
Q  304 tta 306  Q
    |||    
T  15360818 tta 15360816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 2063269 - 2063137
Alignment:
Q  8 aatacaaacgaaaggcgccgtatataaacgaaacacccgaaaaataaacaccataaca---acccttacacacaaaacacctagtcaaaccctacctgac 104  Q
    ||||||||||||||| ||||||||||  |||||||||||||||||||||||||||| |   | || |||||||||  |||||||||||||||||||||||    
T  2063269 aatacaaacgaaaggtgccgtatataggcgaaacacccgaaaaataaacaccataaaagacatccctacacacaa--cacctagtcaaaccctacctgac 2063172  T
Q  105 aacacccaccaaaataaacatcaccacctaaaaac 139  Q
    ||||||| |||||||||||||||||||||||||||    
T  2063171 aacacccgccaaaataaacatcaccacctaaaaac 2063137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 47 - 160
Target Start/End: Original strand, 15126130 - 15126244
Alignment:
Q  47 aaaaataaacaccataac-aacccttacacacaaaacacctagtcaaaccctacctgacaacacccaccaaaataaacatcaccacctaaaaacataccc 145  Q
    |||||||||| ||||||  ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| || |    
T  15126130 aaaaataaaccccataaagaacccttacacacaaaacacctagtcaaatcctacctgacaatacccaccaaaataaacatcaccacctaaaaacaaactc 15126229  T
Q  146 cttcaccaaaccacc 160  Q
     ||||| ||||||||    
T  15126230 gttcacgaaaccacc 15126244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 40470780 - 40470651
Alignment:
Q  8 aatacaaacgaaaggcgccgtatataaacgaaacacccgaaaaataaacaccataacaa-cccttacacacaaaacacctagtcaaaccctacctgacaa 106  Q
    |||||||||||||| | | |||||||  || ||||||  ||||| ||| | ||||| || |||||||||| |||||||||||| ||| || |||||||||    
T  40470780 aatacaaacgaaagacactgtatatatgcggaacaccttaaaaaaaaaaaacataaaaaacccttacacataaaacacctagttaaatccaacctgacaa 40470681  T
Q  107 cacccaccaaaataaacatcaccacctaaa 136  Q
    ||  ||||||||||||||||||||||||||    
T  40470680 cagtcaccaaaataaacatcaccacctaaa 40470651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 25504579 - 25504670
Alignment:
Q  8 aatacaaacgaaaggcgccgtatataaacgaaacacccgaaaaataaacacc-ataacaacccttacacacaaaacacctagtcaaaccctacct 101  Q
    ||||||||| |||||||||||||||| ||||||||||| ||||||||||||| | || | ||| |||||||  ||||||||||||||||| ||||    
T  25504579 aatacaaacaaaaggcgccgtatatagacgaaacaccc-aaaaataaacaccaaaaagaccccctacacac--aacacctagtcaaaccccacct 25504670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 13699066 - 13699098
Alignment:
Q  105 aacacccaccaaaataaacatcaccacctaaaa 137  Q
    |||||||||||||||||||||||||||||||||    
T  13699066 aacacccaccaaaataaacatcaccacctaaaa 13699098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 25504689 - 25504721
Alignment:
Q  105 aacacccaccaaaataaacatcaccacctaaaa 137  Q
    |||||||||||||||||||||||||||||||||    
T  25504689 aacacccaccaaaataaacatcaccacctaaaa 25504721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 7696283 - 7696248
Alignment:
Q  102 gacaacacccaccaaaataaacatcaccacctaaaa 137  Q
    ||||||||||||||||||| ||||||||||||||||    
T  7696283 gacaacacccaccaaaatacacatcaccacctaaaa 7696248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 24308513 - 24308548
Alignment:
Q  102 gacaacacccaccaaaataaacatcaccacctaaaa 137  Q
    |||||||||||||||||||||||||| |||||||||    
T  24308513 gacaacacccaccaaaataaacatcatcacctaaaa 24308548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 27713462 - 27713311
Alignment:
Q  9 atacaaacgaaaggcgccgtatataaacgaaacacccgaaaaataaacaccataacaacccttacacacaaaacacctagtcaaaccctacctgacaaca 108  Q
    |||||||||||||||||| ||||||  || |||||||||||||||||| |||||| ||  | |||||||||| |||||||||||||||||||||||||||    
T  27713462 atacaaacgaaaggcgccatatataggcggaacacccgaaaaataaactccataaaaaatcctacacacaaa-cacctagtcaaaccctacctgacaaca 27713364  T
Q  109 cccaccaaaataaacatcaccacctaaaaacataccccttcaccaaaccacca 161  Q
    ||| ||||||||||||||||| |||||||||| |||||||||| |||||||||    
T  27713363 ccccccaaaataaacatcaccgcctaaaaacaaaccccttcacgaaaccacca 27713311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 39 - 158
Target Start/End: Original strand, 22675034 - 22675154
Alignment:
Q  39 aacacccgaaaaataaacaccataacaa-cccttacacacaaaacacctagtcaaaccctacctgacaacacccaccaaaataaacatcaccacctaaaa 137  Q
    ||||||| |||||||| |||||||| || ||| |||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  22675034 aacacccaaaaaataatcaccataaaaaacccctacacacaaaactcctagtcaaaccatacctgaca-cacccaccaaaataaacatcaccacctaaaa 22675132  T
Q  138 acata-ccccttcaccaaacca 158  Q
    ||| | ||||||||| ||||||    
T  22675133 acagacccccttcacaaaacca 22675154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 4941346 - 4941446
Alignment:
Q  22 gcgccgtatataaacgaaacacccgaaaaataaacaccataacaacccttacacacaaaacacctagtcaaaccctacctgacaacacccaccaaaataa 121  Q
    |||||||||||| ||| |||||| |||||||||||||||||| ||  | ||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  4941346 gcgccgtatatagacggaacacctgaaaaataaacaccataaaaaatcctacacacaaaacacctaatcaaaccctacctgac-acacccaccaaaataa 4941444  T
Q  122 ac 123  Q
    ||    
T  4941445 ac 4941446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 24071948 - 24072080
Alignment:
Q  4 agataatacaaacgaaaggcgccgtatataaacgaaacacccgaaaaataaacaccataaca-acccttacacacaaaacacctagtcaaaccctacctg 102  Q
    ||||||||||||| || |||||||||||||  || |||||||||||| |||||| ||||| | || | |  ||||  ||||||||||||||||||||||     
T  24071948 agataatacaaactaagggcgccgtatataggcggaacacccgaaaa-taaacatcataaaagacacctctacacgtaacacctagtcaaaccctacctt 24072046  T
Q  103 acaacacccaccaaaataaacatcaccacctaaaa 137  Q
     |||||||||||||||||||||||||||| |||||    
T  24072047 -caacacccaccaaaataaacatcaccacataaaa 24072080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 8731328 - 8731237
Alignment:
Q  8 aatacaaacgaaaggcgccgtatataaacgaaacacccgaaaaataaacacc-ataacaacccttacacacaaaacacctagtcaaaccctacct 101  Q
    ||||||||| |||||||||||||||| ||||||||||| ||||||||||||| | || | ||| |||||||  ||||||||||||||||| ||||    
T  8731328 aatacaaacaaaaggcgccgtatatagacgaaacaccc-aaaaataaacaccaaaaagaccccctacacac--aacacctagtcaaaccccacct 8731237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 8731218 - 8731186
Alignment:
Q  105 aacacccaccaaaataaacatcaccacctaaaa 137  Q
    |||||||||||||||||||||||||||||||||    
T  8731218 aacacccaccaaaataaacatcaccacctaaaa 8731186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 7682874 - 7682840
Alignment:
Q  103 acaacacccaccaaaataaacatcaccacctaaaa 137  Q
    |||||||||||||||||| ||||||||||||||||    
T  7682874 acaacacccaccaaaatacacatcaccacctaaaa 7682840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 14302202 - 14302238
Alignment:
Q  101 tgacaacacccaccaaaataaacatcaccacctaaaa 137  Q
    |||||||||||||||||||| || |||||||||||||    
T  14302202 tgacaacacccaccaaaatacacgtcaccacctaaaa 14302238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 30097655 - 30097619
Alignment:
Q  101 tgacaacacccaccaaaataaacatcaccacctaaaa 137  Q
    |||||||||||||||||||| || |||||||||||||    
T  30097655 tgacaacacccaccaaaatacacgtcaccacctaaaa 30097619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 54 - 161
Target Start/End: Original strand, 13098299 - 13098406
Alignment:
Q  54 aacaccataacaacccttacacacaaaacacctagtcaaaccctacctgacaacacccaccaaaataaacatcaccacctaaaaacataccccttcacca 153  Q
    |||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  13098299 aacaccataaaaactcatacacacaaaacacctagtcaaaccctacctgacaacacccaccaaaataaacatcaccacctaaaaacagaccccttcacaa 13098398  T
Q  154 aaccacca 161  Q
    ||||||||    
T  13098399 aaccacca 13098406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 16180659 - 16180732
Alignment:
Q  86 tagtcaaaccctacctgacaacacccaccaaaataaacatcaccacctaaaaacataccccttcaccaaaccacc 160  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||  ||||||||    
T  16180659 tagtcaaaccctacctgacaacatccaccaaaataaacatcaccacct-aaaacagaccccttcaagaaaccacc 16180732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 16180543 - 16180642
Alignment:
Q  4 agataatacaaacgaaaggcgccgtatataaacgaaacacccgaaaaa-taaacaccataacaacc-cttacacacaaaacacctagtcaaaccctacct 101  Q
    |||||||||||| ||||| | |||||||||| || ||||||  ||||| |||||||||||| || | | | ||||||||||| |||||||||||||||||    
T  16180543 agataatacaaatgaaagacaccgtatataagcggaacaccaaaaaaaataaacaccataaaaaactccttcacacaaaacaactagtcaaaccctacct 16180642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 32935102 - 32935137
Alignment:
Q  102 gacaacacccaccaaaataaacatcaccacctaaaa 137  Q
    ||||||||||||||||||||||| ||||||||||||    
T  32935102 gacaacacccaccaaaataaacaccaccacctaaaa 32935137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 136
Target Start/End: Original strand, 17278261 - 17278295
Alignment:
Q  102 gacaacacccaccaaaataaacatcaccacctaaa 136  Q
    |||||||||||||||||||||||| ||||||||||    
T  17278261 gacaacacccaccaaaataaacattaccacctaaa 17278295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 28967269 - 28967134
Alignment:
Q  4 agataatacaaacgaaaggcgccgtatataaacgaaacacccgaaaaataaacaccataacaa-cccttacacacaaaacacctagtcaaaccctacctg 102  Q
    |||||||||||||||||||||| |||||||  || |||||| ||||| |||||||| ||| || ||||||||||||||||||| ||||||||||||||||    
T  28967269 agataatacaaacgaaaggcgctgtatataggcggaacacctgaaaa-taaacaccctaaaaaacccttacacacaaaacaccaagtcaaaccctacctg 28967171  T
Q  103 acaacacccaccaaaataaacatcaccacctaaaaac 139  Q
    |||||||||||||||||||||||| ||||||||||||    
T  28967170 acaacacccaccaaaataaacatcgccacctaaaaac 28967134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 12296508 - 12296442
Alignment:
Q  74 acacaaaacacctagtcaaaccctacctgacaacacccaccaaaataaacatcaccacctaaaaaca 140  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12296508 acacacaacacctagccaaaccctacctgacaacacccaccaaaataaacatcaccacctaaaaaca 12296442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 46487604 - 46487528
Alignment:
Q  74 acacaaaacacctagtcaaaccctacctgacaacacccaccaaaataaacatcaccacctaaaaacataccccttca 150  Q
    ||||| ||||||||| |||||||||| | |||| |||||||||||||||||||||| |||||||||| || ||||||    
T  46487604 acacacaacacctagacaaaccctacttaacaatacccaccaaaataaacatcacctcctaaaaacagactccttca 46487528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 38930177 - 38930118
Alignment:
Q  10 tacaaacgaaaggcgccgtatataaacgaaacacccgaaaaataaacaccataacaaccc 69  Q
    ||||||||||||| ||||||||||   | ||||||||||||||||||||||||| |||||    
T  38930177 tacaaacgaaaggagccgtatataggtggaacacccgaaaaataaacaccataaaaaccc 38930118  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 27314451 - 27314515
Alignment:
Q  74 acacaaaacacctagtcaaaccctacctgacaacacccaccaaaataaacatcaccacctaaaaa 138  Q
    ||||| |||| || ||||||||||||| ||||||||| || |||||||||||||  |||||||||    
T  27314451 acacacaacatctggtcaaaccctaccagacaacacctactaaaataaacatcagtacctaaaaa 27314515  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 43373866 - 43373901
Alignment:
Q  102 gacaacacccaccaaaataaacatcaccacctaaaa 137  Q
    |||||||||||||||||||||||||||| |||||||    
T  43373866 gacaacacccaccaaaataaacatcaccccctaaaa 43373901  T

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Target: scaffold0499 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 54 - 161
Target Start/End: Complemental strand, 6911 - 6804
Alignment:
Q  54 aacaccataacaacccttacacacaaaacacctagtcaaaccctacctgacaacacccaccaaaataaacatcaccacctaaaaacataccccttcacca 153  Q
    |||||||| | || || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  6911 aacaccattaaaatccatacacacaaaacacctagtcaaacccaacctgacaacacccaccaaaataaacatcaccacctaaaaacagaccccttcacaa 6812  T
Q  154 aaccacca 161  Q
    ||||||||    
T  6811 aaccacca 6804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 39 - 142
Target Start/End: Complemental strand, 25438517 - 25438412
Alignment:
Q  39 aacacccgaaaaataaacaccataacaa-cccttacacacaaaacacctagtcaaaccctacctgacaaca-cccaccaaaataaacatcaccacctaaa 136  Q
    |||||||||||| |||||| ||||| || ||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||    
T  25438517 aacacccgaaaagtaaacatcataaaaagcccctacacacaaaacacctagtcaaaccctacctgacaacacccccccaaaataaacatcacctcctaaa 25438418  T
Q  137 aacata 142  Q
    ||||||    
T  25438417 aacata 25438412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 54 - 161
Target Start/End: Original strand, 48058394 - 48058503
Alignment:
Q  54 aacaccataacaacccttacacacaaaacacctagtcaaaccctacctgacaacacccaccaaaataaacatcaccacct--aaaaacataccccttcac 151  Q
    |||||| ||| || || |||||| | |||||| |||| |  |||||||||||||||||||||||||||||||||||||||  ||||||| |||||||| |    
T  48058394 aacaccctaaaaaaccctacacatagaacacccagtcgagtcctacctgacaacacccaccaaaataaacatcaccacctaaaaaaacagaccccttctc 48058493  T
Q  152 caaaccacca 161  Q
     |||||||||    
T  48058494 gaaaccacca 48058503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 137
Target Start/End: Complemental strand, 9107475 - 9107413
Alignment:
Q  74 acacaaaacacctagtcaaaccctacctgacaacacccaccaaaataaacatcaccacctaaaa 137  Q
    ||||| ||||||||| ||||| ||||||  |||||||||||||||||| |||||||||||||||    
T  9107475 acacacaacacctagccaaactctacctt-caacacccaccaaaataagcatcaccacctaaaa 9107413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 28534288 - 28534323
Alignment:
Q  102 gacaacacccaccaaaataaacatcaccacctaaaa 137  Q
    ||||||||||||||||||||||||||||||||||||    
T  28534288 gacaacacccaccaaaataaacatcaccacctaaaa 28534323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 23983526 - 23983491
Alignment:
Q  102 gacaacacccaccaaaataaacatcaccacctaaaa 137  Q
    ||||||||||||||||||||||| ||||||||||||    
T  23983526 gacaacacccaccaaaataaacaccaccacctaaaa 23983491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 25438748 - 25438673
Alignment:
Q  8 aatacaaacgaaaggcgccgtatataaacgaaacacccgaaaaataaacaccataacaa-cccttacacacaaaac 82  Q
    ||||||||||| | || |||||||||  || |||||||||||| |||||||||||| || ||| ||||||||||||    
T  25438748 aatacaaacgatatgccccgtatataggcggaacacccgaaaagtaaacaccataaaaagcccctacacacaaaac 25438673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 47456819 - 47456857
Alignment:
Q  123 catcaccacctaaaaacataccccttcaccaaaccacca 161  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  47456819 catcaccacctaaaaacagaccccttcacgaaaccacca 47456857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 19599031 - 19598882
Alignment:
Q  18 aaaggcgccgtatataaacgaaacacccgaaaaataaacaccataacaaccctta--cacacaaaacaccta----gtcaaaccctacctgacaacaccc 111  Q
    ||||||||||||||||  || |||||| ||||| |||||||||| | || ||| |  |||||||||||||||    |||||||||||||||||||| |||    
T  19599031 aaaggcgccgtatataggcggaacacctgaaaagtaaacaccatgaaaaacctcatgcacacaaaacacctacatggtcaaaccctacctgacaaccccc 19598932  T
Q  112 accaaaataaacatcaccacctaaaaacataccccttcaccaaaccacca 161  Q
    | |||||| |||||||||||||||||| | |  ||||||| |||||||||    
T  19598931 atcaaaatgaacatcaccacctaaaaatagattccttcacgaaaccacca 19598882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 137
Target Start/End: Complemental strand, 16577608 - 16577546
Alignment:
Q  74 acacaaaacacctagtcaaaccctacctgacaacacccaccaaaataaacatcaccacctaaaa 137  Q
    ||||| |||| ||||||| ||||||| |  |||||||||||||||||||||||| |||||||||    
T  16577608 acacacaacatctagtcataccctacttt-caacacccaccaaaataaacatcatcacctaaaa 16577546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 37200423 - 37200388
Alignment:
Q  102 gacaacacccaccaaaataaacatcaccacctaaaa 137  Q
    |||||||||||| |||||||||||||||||||||||    
T  37200423 gacaacacccactaaaataaacatcaccacctaaaa 37200388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 50588964 - 50589015
Alignment:
Q  9 atacaaacgaaaggcgccgtatataaacgaaacacccgaaaaataaacacca 60  Q
    |||||||||||||||||||||||||  || |||||| ||| |||||||||||    
T  50588964 atacaaacgaaaggcgccgtatataggcggaacacctgaagaataaacacca 50589015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 17033988 - 17033942
Alignment:
Q  4 agataatacaaacgaaaggcgccgtatataaacgaaacacccgaaaa 50  Q
    ||||||||||||| ||||||| ||||||||| || ||||||||||||    
T  17033988 agataatacaaacaaaaggcgtcgtatataagcggaacacccgaaaa 17033942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 137
Target Start/End: Original strand, 38548838 - 38548871
Alignment:
Q  104 caacacccaccaaaataaacatcaccacctaaaa 137  Q
    ||||| ||||||||||||||||||||||||||||    
T  38548838 caacatccaccaaaataaacatcaccacctaaaa 38548871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 8862314 - 8862367
Alignment:
Q  10 tacaaacgaaaggcgccgtatataaacgaaacacccgaaaaataaacaccataa 63  Q
    ||||||| |||||||||||||||| ||| |||| ||||||||||||||||||||    
T  8862314 tacaaacaaaaggcgccgtatatagacggaacatccgaaaaataaacaccataa 8862367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 136
Target Start/End: Original strand, 25184919 - 25184953
Alignment:
Q  102 gacaacacccaccaaaataaacatcaccacctaaa 136  Q
    |||||||||||||||||||||||||||||||||||    
T  25184919 gacaacacccaccaaaataaacatcaccacctaaa 25184953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 30235891 - 30235926
Alignment:
Q  102 gacaacacccaccaaaataaacatcaccacctaaaa 137  Q
    |||||||||||||||||||||||||||| |||||||    
T  30235891 gacaacacccaccaaaataaacatcaccccctaaaa 30235926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 47946090 - 47945974
Alignment:
Q  8 aatacaaacgaaaggcgccgtatataaacgaaacacccgaaaaataaacaccataac---aacccttacacacaaaacacctagtcaaaccctacctgac 104  Q
    |||||||||||| |||| ||||||||  || |||||| |||||||||| |||||||    || || ||||||||||| ||||| ||||||| ||  ||||    
T  47946090 aatacaaacgaa-ggcgtcgtatataggcggaacacctgaaaaataaataccataaagaaaaaccctacacacaaaatacctaatcaaaccttatatgac 47945992  T
Q  105 aacacccaccaaaataaac 123  Q
    | |||||||||||||||||    
T  47945991 a-cacccaccaaaataaac 47945974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 1652650 - 1652685
Alignment:
Q  102 gacaacacccaccaaaataaacatcaccacctaaaa 137  Q
    |||||||||||||||||||||||||||| |||||||    
T  1652650 gacaacacccaccaaaataaacatcaccccctaaaa 1652685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 137
Target Start/End: Complemental strand, 12086559 - 12086528
Alignment:
Q  106 acacccaccaaaataaacatcaccacctaaaa 137  Q
    ||||||||||||||||||||||||||||||||    
T  12086559 acacccaccaaaataaacatcaccacctaaaa 12086528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 25594308 - 25594366
Alignment:
Q  102 gacaacacccaccaaaataaacatcaccacctaaaaacataccccttcaccaaaccacca 161  Q
    |||||||||||||| |||||||||||| |||| ||||||||| ||||||| |||| ||||    
T  25594308 gacaacacccaccacaataaacatcactacct-aaaacatactccttcacaaaacgacca 25594366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 27399266 - 27399231
Alignment:
Q  102 gacaacacccaccaaaataaacatcaccacctaaaa 137  Q
    |||||||||||||||||||||||||| |||||||||    
T  27399266 gacaacacccaccaaaataaacatcatcacctaaaa 27399231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 40689505 - 40689552
Alignment:
Q  90 caaaccctacctgacaacacccaccaaaataaacatcaccacctaaaaa 138  Q
    ||||||||||||  |||||||||| ||||||||||||||||| ||||||    
T  40689505 caaaccctacctt-caacacccacaaaaataaacatcaccacttaaaaa 40689552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1384 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 1347 - 1397
Alignment:
Q  13 aaacgaaaggcgccgtatataaacgaaacacccgaaaaataaacaccataa 63  Q
    |||| ||||||||||||||||  |  |||||||||||||||||||||||||    
T  1347 aaacaaaaggcgccgtatataggcagaacacccgaaaaataaacaccataa 1397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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