View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17574_low_4 (Length: 613)
Name: NF17574_low_4
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_4 |
 | |
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| [»] chr1 (9 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 507; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 19 - 613
Target Start/End: Complemental strand, 38086103 - 38085512
Alignment:
| Q |
19 |
atctgatccatctacaagttctaaggtcacttccacttttcaacaagcttctcaacatggtttaaatgtaggaagaacatgggctttcaatgatggaggt |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38086103 |
atctgatccatctacaagttctaaggtcacttccacttttcaacaagcttctcaacatggtttaaatgtaggaagaacatgggctttcaatgatggaggt |
38086004 |
T |
|
| Q |
119 |
tataaagctcttcaaatctctcctggttcttatgatgaaaatgttttcaaggtaannnnnnnnnnnnngagaacttgctctannnnnnngacaaaatttt |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
38086003 |
tataaagctcttcaaatctctcctggttcttatgatgaaaatgttttcaaggtaattttttttttt---agaacttgctctatttttttgacaaaatttt |
38085907 |
T |
|
| Q |
219 |
tgaaaatgtgtagtcattccacgatatgtttttcatcattttctattttactcactggatttaattttcgttgaatacttacatttgtacataggcattg |
318 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38085906 |
tgaaaatgtgtagtcattccactatatgtttttcatcattttctattttactcactggatttaattttcgttgaatacttacatttgtacataggcattg |
38085807 |
T |
|
| Q |
319 |
gattttgtgatatcagaggcaagcaaatatggagtgaaacttatacttagcttggtgaataattggaatgattttggaggcaagaacaaatatgtgcagt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38085806 |
gattttgtgatatcagaggcaagcaaatatggagtgaaacttatacttagcttggtgaataattggaatgattttggaggcaagaacaaatatgtgcagt |
38085707 |
T |
|
| Q |
419 |
gggcaaaagaacgtggtcaaaatatcaaaaacgatgatgacttctttacacaccccgttgttaagcaatactacaaaaatcatgttaaggtatcaaaatt |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38085706 |
gggcaaaagaacgtggtcaaaatatcaaaaacgatgatgacttctttacacaccccgttgttaagcaatactacaaaaatcatgttaaggtatcaaaatt |
38085607 |
T |
|
| Q |
519 |
ctttcaaattatatcttgaattaccactgtaaatatatatatagttattgttaatatacaaaattcatgttaaggtaccatcattctttaattct |
613 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38085606 |
ctttcaaattatatcttgaattagcactgtaaatatatatatagcgattgttaatatacaaaattcatgttaaggtaccataattctttaattct |
38085512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 283 - 522
Target Start/End: Complemental strand, 38155853 - 38155614
Alignment:
| Q |
283 |
ttttcgttgaatacttacatttgtacataggcattggattttgtgatatcagaggcaagcaaatatggagtgaaacttatacttagcttggtgaataatt |
382 |
Q |
| |
|
|||||||||||||||| ||| |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||| |
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| T |
38155853 |
ttttcgttgaatacttgcatgtgtatgtagggtttggattttgtgatatcagaggcaagaaaatatggagtgaaacttatactgagcttagtgaataatt |
38155754 |
T |
|
| Q |
383 |
ggaatgattttggaggcaagaacaaatatgtgcagtgggcaaaagaacgtggtcaaaatatcaaaaacgatgatgacttctttacacaccccgttgttaa |
482 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |||||| || ||||||||||||| |||| ||||||| |
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| T |
38155753 |
ggaatgattttggaggcaaaaagaaatatgtgcagtgggcaagagaacgtggtcaaaatgtcaaaattgaagatgacttctttattaaccctcttgttaa |
38155654 |
T |
|
| Q |
483 |
gcaatactacaaaaatcatgttaaggtatcaaaattcttt |
522 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||| |
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| T |
38155653 |
gcaatactacaaaaacaatgttaaggtatcataattcttt |
38155614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 247 - 513
Target Start/End: Complemental strand, 38142539 - 38142277
Alignment:
| Q |
247 |
tttttcatcattttctattttactcactggatttaattttcgttgaatacttacatttgtacataggcattggattttgtgatatcagaggcaagcaaat |
346 |
Q |
| |
|
|||| |||||||||| |||||||| |||||||| ||||||||||| || ||| ||||| |||| |||||||||||||||||||||||||| ||||| |
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| T |
38142539 |
ttttacatcattttcaattttacttgctggattt----ttcgttgaatatttgcatgtgtacgtagggattggattttgtgatatcagaggcaaacaaat |
38142444 |
T |
|
| Q |
347 |
atggagtgaaacttatacttagcttggtgaataattggaatgattttggaggcaagaacaaatatgtgcagtgggcaaaagaacgtggtcaaaatatcaa |
446 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |||| |
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| T |
38142443 |
atggagtgaaacttatactgagcttagtgaataattggaatgattttggaggcaaaaagaaatatgtgcagtgggcaagagaacgtggtcaaaatgtcaa |
38142344 |
T |
|
| Q |
447 |
aaacgatgatgacttctttacacaccccgttgttaagcaatactacaaaaatcatgttaaggtatca |
513 |
Q |
| |
|
|| || ||||||||||||| | || |||||||||||||||||||||| |||||||||||||| |
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| T |
38142343 |
aattgaagatgacttctttattaatcctcttgttaagcaatactacaaaaacaatgttaaggtatca |
38142277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 310 - 510
Target Start/End: Complemental strand, 38110914 - 38110714
Alignment:
| Q |
310 |
taggcattggattttgtgatatcagaggcaagcaaatatggagtgaaacttatacttagcttggtgaataattggaatgattttggaggcaagaacaaat |
409 |
Q |
| |
|
|||| ||| |||||||||||||||||| ||| ||||| |||||| ||||||||||| ||||||||||||||||||||| ||| ||||| || | |||| |
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|
| T |
38110914 |
tagggattagattttgtgatatcagagtcaaaaaaatacggagtgcaacttatacttggcttggtgaataattggaatgctttgggaggaaaacataaat |
38110815 |
T |
|
| Q |
410 |
atgtgcagtgggcaaaagaacgtggtcaaaatatcaaaaacgatgatgacttctttacacaccccgttgttaagcaatactacaaaaatcatgttaaggt |
509 |
Q |
| |
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|||| || ||||||| ||||||||||||| || |||||| ||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
38110814 |
atgtacaatgggcaagagaacgtggtcaacatgtcaaaagcgacgatgacttctttacacatcccgttgttaagcaatactacaaaaaccatgttaaggt |
38110715 |
T |
|
| Q |
510 |
a |
510 |
Q |
| |
|
| |
|
|
| T |
38110714 |
a |
38110714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 319 - 522
Target Start/End: Complemental strand, 38090789 - 38090586
Alignment:
| Q |
319 |
gattttgtgatatcagaggcaagcaaatatggagtgaaacttatacttagcttggtgaataattggaatgattttggaggcaagaacaaatatgtgcagt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||||| ||||| | |||||||||||| ||||||||||||| ||||||||||| || | |
|
|
| T |
38090789 |
gattttgtgatatcagaggcaagcaaatatggagtgaaattgatactaagcttagccaataattggaataattttggaggcaaaaacaaatatgttcaat |
38090690 |
T |
|
| Q |
419 |
gggcaaaagaacgtggtcaaaatatcaaaaacgatgatgacttctttacacaccccgttgttaagcaatactacaaaaatcatgttaaggtatcaaaatt |
518 |
Q |
| |
|
|||||| ||||| ||||| || || ||||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||| ||| || |||| |
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|
| T |
38090689 |
gggcaagagaacacggtcataacataaaaaatgacgacgacttctttacacaccctcttgttaagcaatactacaaaaatcatgttaaagtaccataatt |
38090590 |
T |
|
| Q |
519 |
cttt |
522 |
Q |
| |
|
|||| |
|
|
| T |
38090589 |
cttt |
38090586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 38156218 - 38156064
Alignment:
| Q |
19 |
atctgatccatctacaagttctaaggtcacttccacttttcaacaagcttctcaacatggtttaaatgtaggaagaacatgggctttcaatgatggaggt |
118 |
Q |
| |
|
|||||| ||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | |
|
|
| T |
38156218 |
atctgacccatctacaagggtcaaggtcacgtccaattttcaacaagcttctcaacatggtttaaatgtgggaagaacatgggctttcaacgatggagat |
38156119 |
T |
|
| Q |
119 |
tataaagctcttcaaatctctcctggttcttatgatgaaaatgttttcaaggtaa |
173 |
Q |
| |
|
| |||| |||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38156118 |
tctaaacctcttcaaatttctcctggttcttatgatgaaaatgtcttcaaggtaa |
38156064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 38111923 - 38111769
Alignment:
| Q |
19 |
atctgatccatctacaagttctaaggtcacttccacttttcaacaagcttctcaacatggtttaaatgtaggaagaacatgggctttcaatgatggaggt |
118 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | ||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||| |
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|
| T |
38111923 |
atctgacccatctacaagttctaaggtcacttcaaatttccaacaagcttctcgacatggtttaaatgtaggaagaacatgggcttgcaacgatggaggt |
38111824 |
T |
|
| Q |
119 |
tataaagctcttcaaatctctcctggttcttatgatgaaaatgttttcaaggtaa |
173 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||||||||| |||| ||||| |
|
|
| T |
38111823 |
tataaagctcttcagatctctcctggcaagtacgatgaaaatgtcttcagggtaa |
38111769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 56 - 165
Target Start/End: Complemental strand, 38091646 - 38091537
Alignment:
| Q |
56 |
tttcaacaagcttctcaacatggtttaaatgtaggaagaacatgggctttcaatgatggaggttataaagctcttcaaatctctcctggttcttatgatg |
155 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||| |||||||| |
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|
| T |
38091646 |
tttcaacaagcttcacaacatggtttaaatgtaggaagaacatgggctttcaatgatggaggctataaagcccttcaaatttctcctggtttttatgatg |
38091547 |
T |
|
| Q |
156 |
aaaatgtttt |
165 |
Q |
| |
|
||| |||||| |
|
|
| T |
38091546 |
aaactgtttt |
38091537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 38142904 - 38142750
Alignment:
| Q |
19 |
atctgatccatctacaagttctaaggtcacttccacttttcaacaagcttctcaacatggtttaaatgtaggaagaacatgggctttcaatgatggaggt |
118 |
Q |
| |
|
|||||| ||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||| | |
|
|
| T |
38142904 |
atctgacccatctacaagggtcaaggtcacgtccaattttcaacaagcttctcaacatggtttaaatgtgggaagaacattggctttcaacgatggagat |
38142805 |
T |
|
| Q |
119 |
tataaagctcttcaaatctctcctggttcttatgatgaaaatgttttcaaggtaa |
173 |
Q |
| |
|
|||||| ||||||| ||||||||||| || ||||||||||| |||||||||| |
|
|
| T |
38142804 |
tataaacctcttcagatctctcctggcaagtacgatgaaaatgtcttcaaggtaa |
38142750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 53 - 153
Target Start/End: Original strand, 45891705 - 45891805
Alignment:
| Q |
53 |
acttttcaacaagcttctcaacatggtttaaatgtaggaagaacatgggctttcaatgatggaggttataaagctcttcaaatctctcctggttcttatg |
152 |
Q |
| |
|
||||||||| ||||||| ||| |||||||||| | | |||||||||||| |||||||||||||||||||||||||||||||| || |||||||| |||| |
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|
| T |
45891705 |
acttttcaagaagcttcccaaaatggtttaaacttggcaagaacatgggccttcaatgatggaggttataaagctcttcaaatttcacctggttcctatg |
45891804 |
T |
|
| Q |
153 |
a |
153 |
Q |
| |
|
| |
|
|
| T |
45891805 |
a |
45891805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 310 - 504
Target Start/End: Original strand, 45892272 - 45892466
Alignment:
| Q |
310 |
taggcattggattttgtgatatcagaggcaagcaaatatggagtgaaacttatacttagcttggtgaataattggaatgattttggaggcaagaacaaat |
409 |
Q |
| |
|
|||| ||||||||||||||| ||||| ||| | || |||||||| | | ||||| || || ||||||||||||||||||| ||| || || | ||| |
|
|
| T |
45892272 |
tagggattggattttgtgatttcagaagcagggaagaatggagtgcagttgatactaagtttagtgaataattggaatgattatggtggaaaaagtcaat |
45892371 |
T |
|
| Q |
410 |
atgtgcagtgggcaaaagaacgtggtcaaaatatcaaaaacgatgatgacttctttacacaccccgttgttaagcaatactacaaaaatcatgtt |
504 |
Q |
| |
|
|||| | ||||| ||||||| |||||||| ||||| || |||||||| |||| ||| || ||||||| ||||| |||||||| |||||| |
|
|
| T |
45892372 |
atgttaaatgggccaaagaacagggtcaaaacatcaacaatgatgatgatttctacgtacatcctattgttaaacaatattacaaaaaccatgtt |
45892466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 52433379 - 52433432
Alignment:
| Q |
91 |
aagaacatgggctttcaatgatggaggttataaagctcttcaaatctctcctgg |
144 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||| | |||||| ||||||||| |
|
|
| T |
52433379 |
aagaacatgggctttcagtgatggtggttataaaccccttcaatactctcctgg |
52433432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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