View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_42 (Length: 320)
Name: NF17574_low_42
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 8e-58; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 45 - 166
Target Start/End: Complemental strand, 40430294 - 40430173
Alignment:
| Q |
45 |
aaactctgactcttaatataattacatggtcaaactcttaccttcgacaaatatgtaaatccaactcattaaatcaaacaagcaacttctaaaactgtac |
144 |
Q |
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| T |
40430294 |
aaactctgactcttagtataattacatggtcaaactcttaccttcgacaaatatgtaaatccaactcattaaatcaaacaagcaacttctaaaactgtaa |
40430195 |
T |
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| Q |
145 |
agaaacacttctactaatattc |
166 |
Q |
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| T |
40430194 |
agaaacacttctactaatattc |
40430173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 40430086 - 40430019
Alignment:
| Q |
253 |
cttgaggccaatgagagataatcctttgcttaagcatatcaacagtggcagcagaagaattcttaaac |
320 |
Q |
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| T |
40430086 |
cttgaggccaatgagagataatcctttgcttaagcatatcaacagtggcagcagaagaatacttaaac |
40430019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 40424539 - 40424484
Alignment:
| Q |
257 |
aggccaatgagagataatcctttgcttaagcatatcaacagtggcagcagaagaat |
312 |
Q |
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| T |
40424539 |
aggccaatcagagacaattctttgcttaagcatatcaacagtagcagcagatgaat |
40424484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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