View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_43 (Length: 310)
Name: NF17574_low_43
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 24777974 - 24778265
Alignment:
| Q |
1 |
acagatgaataaaagtgattaccagtgtcaccaatgctactaagatctttgcaaatcctagcaaactcagcagatggcatcctaacaatggcatcatatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24777974 |
acagatgaataaaagtgattaccagtgtcaccaatgctactaagatctttgcaaatcctagcaaactcagcagatggcatcctaacaatggcatcatatt |
24778073 |
T |
|
| Q |
101 |
cagcctctggaattccaaggtgctcactatcaatgtccatcagcttcatctcaaaatcagaaatcttgtcttgggcttcatcacataaccacnnnnnnnn |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24778074 |
cagcctctggaattccaaggtgctcactatcaatgtccatcagcttcatctcaaaatcagaaatcttgtcttgggcttcatcacataaccacaaaaaaaa |
24778173 |
T |
|
| Q |
201 |
caagtcaggaaattacactattaataacatatgaaccgcaatggctacccaataaatcacaagtgataccaccacaaatatgataccaaaac |
292 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24778174 |
caagccaggaaattacactattattaacatatgaaccgcaatggctacctaataaatcacaagtgataccaccacaaatatgataccaaaac |
24778265 |
T |
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