View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_45 (Length: 295)
Name: NF17574_low_45
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 281
Target Start/End: Original strand, 29643504 - 29643776
Alignment:
| Q |
15 |
tatccagctattcatttcatttct------gataattttaagaaaattcatgtgtatctagattctagacactagagtagtagacggtgatattgcaatt |
108 |
Q |
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| T |
29643504 |
tatccagctattcatttcatttcttatgttgataattttaagaaaattcatgtgtatctagattctagacactacagtagtagacggtgatattgcaatt |
29643603 |
T |
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| Q |
109 |
gtttccttgacctattttagaaactttatttcactattttgtattgaatttaatatggttaattataattttaactattttgattagtcatataattata |
208 |
Q |
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| T |
29643604 |
gtttccttggcctattttagaaactttatttcactattttgtattgaatttaatatggttaattataattttaactattttgattagtcatataattata |
29643703 |
T |
|
| Q |
209 |
tgtctatatctgaactataaaattatatgttgtctatatcttagtgtacttagcctttggagcatttactatt |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29643704 |
tgtctatatctgaactataaaattatatgttgtctatatcttagtgtacttagcctttggagcatttactatt |
29643776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 148
Target Start/End: Complemental strand, 29639726 - 29639692
Alignment:
| Q |
114 |
cttgacctattttagaaactttatttcactatttt |
148 |
Q |
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| T |
29639726 |
cttgacctattttagaaactttatttcactatttt |
29639692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 38 - 281
Target Start/End: Original strand, 38335002 - 38335245
Alignment:
| Q |
38 |
tgataattttaagaaaattcatgtgtatctagattctagacactagagtagtagacggtgatattgcaattgtttccttgacctattttagaaactttat |
137 |
Q |
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| T |
38335002 |
tgataattttaagaaaattcatgtgtatctagattctagacactacagtagtagacggtgatattgcaattgtttccttggcctattttagaaactttat |
38335101 |
T |
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| Q |
138 |
ttcactattttgtattgaatttaatatggttaattataattttaactattttgattagtcatataattatatgtctatatctgaactataaaattatatg |
237 |
Q |
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| T |
38335102 |
ttcactattttgtattgaatttaatatggttaattataattttaactattttgattagtcatataattatatgtctatatctgaactataaaattatatg |
38335201 |
T |
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| Q |
238 |
ttgtctatatcttagtgtacttagcctttggagcatttactatt |
281 |
Q |
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| T |
38335202 |
ttgtctatatcttagtgtacttagcctttggagcatttactatt |
38335245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 48 - 281
Target Start/End: Complemental strand, 20420234 - 20419996
Alignment:
| Q |
48 |
aagaaaattcatgtgtatctagattctagacactagagtagtag------acggtgatattgcaattgtttccttgacctattttagaaactttatttca |
141 |
Q |
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| T |
20420234 |
aagaaaattcatgtgtatctagattctagacactacagtagtagtcgtagacggtgatattgcaattgtttccttggcctattttagaaactttatttca |
20420135 |
T |
|
| Q |
142 |
ctattttgtattgaatttaatatggttaattataattttaactattttgattagtcatataattatatgtctatatctgaactataaaattatatgttgt |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20420134 |
ctattttgtattgaatttaatatggttaattataattt-aactattttgattagtcatataattatatgtctatatctgaactataaaattatatgttgt |
20420036 |
T |
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| Q |
242 |
ctatatcttagtgtacttagcctttggagcatttactatt |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
20420035 |
ctatatcttagtgtacttagcctttggagcatttactatt |
20419996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 31982728 - 31982779
Alignment:
| Q |
152 |
ttgaatttaatatggttaattataattttaactattttgattagtcatataa |
203 |
Q |
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|||| |||||||||||| |||||||||||| |||||||||| || ||||||| |
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| T |
31982728 |
ttgattttaatatggtttattataattttacctattttgatcagccatataa |
31982779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 7760511 - 7760471
Alignment:
| Q |
152 |
ttgaatttaatatggttaattataattttaactattttgat |
192 |
Q |
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|||| ||||||||||||| ||||||||||| |||||||||| |
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| T |
7760511 |
ttgattttaatatggttagttataattttacctattttgat |
7760471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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