View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_46 (Length: 293)
Name: NF17574_low_46
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 275
Target Start/End: Original strand, 34851713 - 34851979
Alignment:
| Q |
9 |
gataagaatcatggtgatcacaatggtaacaattccagcagtgcttcaagaggggactggtgggaaggtaggactaggaaccataatttaatttattttg |
108 |
Q |
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| T |
34851713 |
gataagaatcatggtgatcacaatggtaacaattccagcagtgcttcaagaggggactggtgggaaggtaggactaggaaccataatttaatttattttg |
34851812 |
T |
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| Q |
109 |
gctaagaaaagttttcataattaaaaactagatattaaaatatggccactatcattagtattatgcctttgttactcattttcattacacaatttcgatt |
208 |
Q |
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| T |
34851813 |
gctaagaaaagttttcataattaaaaactagatattaaaaaatggccactatcattagtattatgtctttgttactcattttcattacacaatttcgatt |
34851912 |
T |
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| Q |
209 |
tttccaggttccctttattactaaatcagtgaggcatggtattaaaatttagcatcctgcaggtaca |
275 |
Q |
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| T |
34851913 |
tttccaggttccctttattactaaatcagtgaggcatggtattaaaatttagcatcctgcaggtaca |
34851979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 3651224 - 3651160
Alignment:
| Q |
14 |
gaatcatggtgatcacaatggtaacaattccagcagtgcttcaagaggggactggtgggaaggta |
78 |
Q |
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| T |
3651224 |
gaataatggtgatctcaatggtaacaattcaaacagcgcttcaagaggcgactggtggcaaggta |
3651160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 3512770 - 3512828
Alignment:
| Q |
212 |
ccaggttccctttattactaaatcagtgaggcatggtattaaaatttagcatcctgcag |
270 |
Q |
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| T |
3512770 |
ccaggttccctttattactaaatcactgaaacatggtgttaagagttagcattctgcag |
3512828 |
T |
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