View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_49 (Length: 288)
Name: NF17574_low_49
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 33093004 - 33093267
Alignment:
| Q |
19 |
agtttccccaaaggaagaataaccagcgacgactatgacagttgcaacaatgctttaaaggttcttgctcaaaagcttttaaaactccgcaaggttaatc |
118 |
Q |
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| T |
33093004 |
agtttccccaaaggaagaataaccagcgacgactacgacagttgcaacaatgctttaaaggttcttgctcaaaagcttttaaaactccgcaaggttaatc |
33093103 |
T |
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| Q |
119 |
tctcaggtaatttctatgttaacgattca----nnnnnnnnnnnnnnaattgtgcagcaactgtaagcttctagatgaggtggttatgttagaatgtcct |
214 |
Q |
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| T |
33093104 |
tctcaggtaatttctatgttaacgattcatttttttttttttttttgaattgtgaagcaactgtaagcttctagatgaggtggttatgttagaatgtcct |
33093203 |
T |
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| Q |
215 |
ttactaactcatgctggtattgcttctgcaatctatgagagaccaagtttgtcttctttctctg |
278 |
Q |
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| T |
33093204 |
ttactaactcatgctggtattgcttctgcaatctatgagagaccaagtttgtcttctttctctg |
33093267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 33397468 - 33397395
Alignment:
| Q |
67 |
aatgctttaaaggttcttgctcaaaagcttttaaaactccgcaaggttaatctctcaggtaatttctatgttaa |
140 |
Q |
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| T |
33397468 |
aatgctttgaagcttctcactcaaaagctttcaaaactccgcaaggttaatctctctggtcatttctacgttaa |
33397395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 37579951 - 37580008
Alignment:
| Q |
63 |
caacaatgctttaaaggttcttgctcaaaagcttttaaaactccgcaaggttaatctc |
120 |
Q |
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| T |
37579951 |
caacaatgctctaaaggttcttactcaaaagctttcaaaactctgcaaggttaatctc |
37580008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 246
Target Start/End: Original strand, 36810242 - 36810323
Alignment:
| Q |
165 |
tgtgcagcaactgtaagcttctagatgaggtggttatgttagaatgtcctttactaactcatgctggtattgcttctgcaat |
246 |
Q |
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| T |
36810242 |
tgtgcaggaactgtgagcttttagaagaggtggttatgttcgattgccctttcctaacacgtgctggtattgctactgcaat |
36810323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 36876545 - 36876478
Alignment:
| Q |
67 |
aatgctttaaaggttcttgctcaaaagcttttaaaactccgcaaggttaatctctcaggtaatttcta |
134 |
Q |
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| T |
36876545 |
aatgctctaaagcttcttactcaaaggctttcaaaacttcgcaaggttaatttctctggtaatttcta |
36876478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 27004894 - 27004951
Alignment:
| Q |
65 |
acaatgctttaaaggttcttgctcaaaagcttttaaaactccgcaaggttaatctctc |
122 |
Q |
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| T |
27004894 |
acaatgctctacagcttcttactcaaaagctttcaaaactccgcaatgttaatctctc |
27004951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 27005043 - 27005103
Alignment:
| Q |
218 |
ctaactcatgctggtattgcttctgcaatctatgagagaccaagtttgtcttctttctctg |
278 |
Q |
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| T |
27005043 |
ctaacacatgatggtattgcttctgcaatctaccagagacccactttgaattctttctctg |
27005103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 18723543 - 18723617
Alignment:
| Q |
73 |
ttaaaggttcttgctcaaaagcttttaaaactccgcaaggttaatctctcaggtaatttctatgttaacgattca |
147 |
Q |
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| T |
18723543 |
ttaaaggttcttactcaaaggctttcaaaactccgcaaagttaatctttctggtaatatctacattaatgattca |
18723617 |
T |
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