View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_5 (Length: 575)
Name: NF17574_low_5
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 1 - 563
Target Start/End: Complemental strand, 46763511 - 46762949
Alignment:
| Q |
1 |
ttcatgagaaacagaacaaagccttttattttatttttcttggtaaaattgaagtaggatacctatagttctgcacatcgataattcgaggatggtcaag |
100 |
Q |
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| T |
46763511 |
ttcatgagaaacagaacaaagccttttattttatttttcttggtaaaattgaagtaggatacctatagttctgcacatcgataattcgaggatggtcaag |
46763412 |
T |
|
| Q |
101 |
attcattcttcctcgcctaacctgactcgtgctcctgctaaacttctctgttcatagcaatgaagggttataaacaatttgtgcaaatataaatatcagc |
200 |
Q |
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| T |
46763411 |
attcattcttcctcgcctaacctgactcgtgctcctgctaaacttctctgttcatagcaatgaagggttataaacaatttgtgcaaatataaatatcagc |
46763312 |
T |
|
| Q |
201 |
attttaaatgataccatcaagaagaacttcaaaaggacatgattcaagaaatggttcacctgttttgctctttttgattgtgcatggttctctctcagag |
300 |
Q |
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| T |
46763311 |
attttaaatgataccatcaagaagaacttcaaaaggacatgattcaagaaatggttcacctgttttgctctttttgattgtgcatggttctctctcagag |
46763212 |
T |
|
| Q |
301 |
aaactattcctacttccatattcaacctcacctcctaaagaaagaaaacagtaactgagtttatttggatgccaagaaattgtagcaatctaacttatta |
400 |
Q |
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| T |
46763211 |
aagctattcctacttccatattcaacctcacctcctaaagaaggaaaacagtaactgagtttatttggatgccaagaaattgtagcaatctaacttatta |
46763112 |
T |
|
| Q |
401 |
ttcaacaaagataataattgaagaataaattgttgaaattgatcactattaaaaagtgaattttgaagaaaaaacaaagatactaacctccataaacaac |
500 |
Q |
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| T |
46763111 |
ttcaacaaagataataattgaagaataaattgttgaaattgatcactattaaaaagtgaattttgaagaaaaaacaaagatactaacctccataaacaac |
46763012 |
T |
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| Q |
501 |
agcatctgcttgaatatcttcacatttgcttttgaaattaaaaaactttctaaccatattctt |
563 |
Q |
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| T |
46763011 |
agcatctgcttgaatatcttcacatttgcttttgaaattaaaaaactttctaaccattttctt |
46762949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 59 - 151
Target Start/End: Complemental strand, 1083826 - 1083734
Alignment:
| Q |
59 |
atacctatagttctgcacatcgataattcgaggatggtcaagattcattcttcctcgcctaacctgactcgtgctcctgctaaacttctctgt |
151 |
Q |
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|||||||||||| || ||||| ||||||| |||||||||||| ||||| || |||||||||||||||||| | |||||||||| |||||||| |
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| T |
1083826 |
atacctatagttatggacatctataattctaggatggtcaaggttcatcctcgctcgcctaacctgactcgagttcctgctaaatttctctgt |
1083734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 258 - 316
Target Start/End: Complemental strand, 1083640 - 1083582
Alignment:
| Q |
258 |
acctgttttgctctttttgattgtgcatggttctctctcagagaaactattcctacttc |
316 |
Q |
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| T |
1083640 |
acctgttttgctctttttgattgtgcttggctctctctcagacaaactactcctgcttc |
1083582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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