View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17574_low_50 (Length: 283)

Name: NF17574_low_50
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17574_low_50
NF17574_low_50
[»] chr6 (15 HSPs)
chr6 (18-268)||(9568500-9568750)
chr6 (37-180)||(28085304-28085445)
chr6 (37-180)||(32755847-32755990)
chr6 (28-177)||(5258352-5258501)
chr6 (58-180)||(9706704-9706824)
chr6 (53-180)||(33083986-33084111)
chr6 (18-56)||(9568753-9568791)
chr6 (29-180)||(9593911-9594066)
chr6 (117-178)||(33998295-33998356)
chr6 (29-216)||(608047-608234)
chr6 (144-196)||(4948625-4948677)
chr6 (144-196)||(4955596-4955648)
chr6 (58-180)||(20427870-20427990)
chr6 (73-176)||(14389416-14389511)
chr6 (117-178)||(35043732-35043793)
[»] chr4 (51 HSPs)
chr4 (51-216)||(31458916-31459085)
chr4 (29-180)||(436157-436306)
chr4 (28-179)||(41192763-41192914)
chr4 (37-180)||(31960027-31960168)
chr4 (37-180)||(53707722-53707863)
chr4 (117-176)||(25257870-25257929)
chr4 (18-180)||(54470135-54470295)
chr4 (18-183)||(4440780-4440941)
chr4 (37-180)||(33227137-33227278)
chr4 (58-177)||(37797783-37797900)
chr4 (62-180)||(12494678-12494794)
chr4 (24-180)||(17900408-17900562)
chr4 (120-180)||(21106912-21106972)
chr4 (37-180)||(48174306-48174447)
chr4 (37-180)||(52569728-52569869)
chr4 (117-180)||(1777306-1777369)
chr4 (117-180)||(25967558-25967621)
chr4 (28-180)||(51252665-51252813)
chr4 (120-178)||(18966483-18966541)
chr4 (18-144)||(28497452-28497577)
chr4 (37-180)||(48622756-48622895)
chr4 (118-180)||(49987356-49987418)
chr4 (51-174)||(51421666-51421785)
chr4 (119-180)||(2588909-2588970)
chr4 (37-180)||(33191061-33191202)
chr4 (117-177)||(37773741-37773801)
chr4 (118-215)||(40933188-40933289)
chr4 (117-177)||(43070055-43070115)
chr4 (120-180)||(45423547-45423607)
chr4 (73-178)||(33709849-33709957)
chr4 (117-180)||(50286899-50286962)
chr4 (18-179)||(1380296-1380455)
chr4 (37-180)||(43433846-43433993)
chr4 (117-178)||(20105762-20105823)
chr4 (117-170)||(45185308-45185361)
chr4 (24-101)||(46715572-46715649)
chr4 (117-169)||(10208977-10209029)
chr4 (58-180)||(27450413-27450527)
chr4 (130-178)||(31452402-31452450)
chr4 (120-180)||(47265496-47265556)
chr4 (37-180)||(56375218-56375359)
chr4 (80-178)||(10775678-10775774)
chr4 (117-180)||(23906592-23906655)
chr4 (17-177)||(25755248-25755406)
chr4 (84-178)||(34233291-34233385)
chr4 (119-180)||(41009643-41009704)
chr4 (138-179)||(49739106-49739147)
chr4 (137-178)||(51841502-51841543)
chr4 (121-177)||(17668406-17668462)
chr4 (80-177)||(44360014-44360113)
chr4 (128-180)||(45094464-45094516)
[»] chr3 (23 HSPs)
chr3 (29-180)||(52138728-52138877)
chr3 (71-180)||(2340961-2341068)
chr3 (37-180)||(47233809-47233950)
chr3 (29-180)||(54128306-54128455)
chr3 (51-180)||(28245365-28245492)
chr3 (111-183)||(45236781-45236853)
chr3 (37-180)||(54278948-54279089)
chr3 (37-180)||(33272235-33272382)
chr3 (71-183)||(344958-345068)
chr3 (38-180)||(51447924-51448063)
chr3 (117-176)||(36820250-36820309)
chr3 (117-180)||(46568044-46568107)
chr3 (83-180)||(22001-22096)
chr3 (28-178)||(50249311-50249465)
chr3 (28-91)||(21200563-21200626)
chr3 (117-180)||(25191307-25191370)
chr3 (18-166)||(45289285-45289434)
chr3 (126-216)||(30345415-30345505)
chr3 (118-180)||(53519514-53519576)
chr3 (122-179)||(46431967-46432024)
chr3 (37-169)||(49503767-49503897)
chr3 (119-180)||(49841539-49841600)
chr3 (117-177)||(38054628-38054688)
[»] chr7 (33 HSPs)
chr7 (37-180)||(34869348-34869489)
chr7 (37-180)||(35906414-35906555)
chr7 (37-180)||(13859221-13859362)
chr7 (51-180)||(36514434-36514559)
chr7 (37-180)||(49029204-49029345)
chr7 (28-180)||(39811885-39812035)
chr7 (37-180)||(12841488-12841629)
chr7 (37-180)||(33350019-33350160)
chr7 (83-180)||(43282333-43282431)
chr7 (38-178)||(28020894-28021032)
chr7 (37-180)||(37617872-37618014)
chr7 (37-180)||(31005151-31005292)
chr7 (18-179)||(46356050-46356209)
chr7 (51-180)||(47848602-47848729)
chr7 (117-177)||(27021997-27022057)
chr7 (37-178)||(33072884-33073021)
chr7 (37-180)||(39906583-39906724)
chr7 (37-180)||(44855385-44855526)
chr7 (37-180)||(45836693-45836834)
chr7 (117-180)||(14593689-14593752)
chr7 (28-180)||(19262637-19262785)
chr7 (117-176)||(29653845-29653904)
chr7 (117-180)||(36651922-36651985)
chr7 (38-180)||(5335850-5335988)
chr7 (120-177)||(38606936-38606993)
chr7 (117-178)||(40008708-40008769)
chr7 (23-104)||(40169651-40169732)
chr7 (37-180)||(11593888-11594029)
chr7 (117-177)||(24434656-24434716)
chr7 (117-180)||(16013212-16013275)
chr7 (117-180)||(24549978-24550041)
chr7 (80-180)||(48736155-48736253)
chr7 (135-216)||(32630483-32630568)
[»] chr1 (31 HSPs)
chr1 (18-180)||(43240573-43240735)
chr1 (37-180)||(1210673-1210814)
chr1 (17-180)||(43423645-43423808)
chr1 (38-180)||(8671848-8671986)
chr1 (51-180)||(22090022-22090151)
chr1 (37-180)||(9592662-9592803)
chr1 (37-180)||(30202343-30202484)
chr1 (51-180)||(14226056-14226181)
chr1 (63-178)||(18793227-18793340)
chr1 (29-180)||(32231159-32231308)
chr1 (37-180)||(34792562-34792703)
chr1 (37-180)||(51440978-51441119)
chr1 (59-180)||(696197-696316)
chr1 (130-180)||(26016365-26016415)
chr1 (24-180)||(40419567-40419721)
chr1 (118-174)||(19908662-19908718)
chr1 (117-180)||(4379933-4379996)
chr1 (58-180)||(32082979-32083099)
chr1 (117-159)||(19969652-19969694)
chr1 (37-180)||(51601986-51602125)
chr1 (80-180)||(9509246-9509344)
chr1 (82-216)||(37463131-37463261)
chr1 (37-180)||(15085862-15086003)
chr1 (121-185)||(52442799-52442863)
chr1 (58-180)||(4001689-4001809)
chr1 (117-180)||(4590815-4590878)
chr1 (121-180)||(49347688-49347747)
chr1 (140-177)||(17275137-17275174)
chr1 (19-104)||(48431601-48431686)
chr1 (126-158)||(854087-854119)
chr1 (117-180)||(51234542-51234606)
[»] scaffold0018 (1 HSPs)
scaffold0018 (37-183)||(31393-31537)
[»] chr8 (28 HSPs)
chr8 (37-180)||(36545075-36545218)
chr8 (29-183)||(40813247-40813401)
chr8 (29-180)||(36395154-36395304)
chr8 (29-180)||(39946785-39946934)
chr8 (117-180)||(12492133-12492196)
chr8 (117-176)||(32043522-32043581)
chr8 (51-180)||(36565468-36565595)
chr8 (71-174)||(44681286-44681387)
chr8 (71-177)||(13171896-13172000)
chr8 (28-156)||(9695583-9695709)
chr8 (120-180)||(30748387-30748447)
chr8 (74-157)||(7046285-7046366)
chr8 (125-180)||(39051070-39051125)
chr8 (82-180)||(39760682-39760778)
chr8 (80-167)||(25985462-25985545)
chr8 (51-177)||(45512722-45512847)
chr8 (51-180)||(2796483-2796612)
chr8 (117-178)||(16351320-16351381)
chr8 (117-180)||(16252863-16252926)
chr8 (117-180)||(29520588-29520651)
chr8 (117-180)||(30783331-30783394)
chr8 (117-180)||(36069571-36069634)
chr8 (73-178)||(10080155-10080257)
chr8 (117-170)||(7103200-7103253)
chr8 (117-170)||(16705700-16705753)
chr8 (135-180)||(43732495-43732540)
chr8 (117-170)||(44175187-44175240)
chr8 (117-177)||(39953555-39953615)
[»] chr5 (29 HSPs)
chr5 (58-178)||(32516488-32516604)
chr5 (117-179)||(5305545-5305607)
chr5 (51-180)||(24178438-24178565)
chr5 (38-180)||(1275193-1275332)
chr5 (37-180)||(2075687-2075828)
chr5 (117-177)||(9235000-9235060)
chr5 (117-177)||(28186959-28187019)
chr5 (117-180)||(1287880-1287943)
chr5 (37-169)||(31636133-31636261)
chr5 (117-216)||(21093664-21093767)
chr5 (80-158)||(418243-418317)
chr5 (117-215)||(7678369-7678471)
chr5 (117-178)||(36123489-36123550)
chr5 (37-180)||(4496310-4496453)
chr5 (121-180)||(6368220-6368279)
chr5 (117-180)||(11002712-11002775)
chr5 (18-104)||(42199290-42199374)
chr5 (53-180)||(14667685-14667816)
chr5 (128-177)||(11729022-11729071)
chr5 (58-180)||(33006590-33006708)
chr5 (37-180)||(16347591-16347732)
chr5 (117-181)||(34194787-34194851)
chr5 (117-180)||(10639225-10639288)
chr5 (137-180)||(27998351-27998394)
chr5 (18-170)||(6888931-6889081)
chr5 (119-180)||(10083032-10083092)
chr5 (147-180)||(43558135-43558168)
chr5 (120-180)||(21952279-21952339)
chr5 (25-109)||(33667213-33667297)
[»] chr2 (26 HSPs)
chr2 (53-180)||(3243882-3244005)
chr2 (80-178)||(4598818-4598916)
chr2 (58-216)||(38429772-38429932)
chr2 (37-180)||(8180708-8180849)
chr2 (28-183)||(7825283-7825438)
chr2 (18-180)||(9556563-9556722)
chr2 (32-178)||(9578911-9579053)
chr2 (37-185)||(38452898-38453048)
chr2 (37-178)||(3866002-3866141)
chr2 (71-180)||(19337097-19337203)
chr2 (73-166)||(40759041-40759133)
chr2 (18-183)||(23714455-23714615)
chr2 (18-183)||(24102127-24102287)
chr2 (117-180)||(4807520-4807583)
chr2 (117-180)||(36183379-36183442)
chr2 (129-180)||(45077676-45077727)
chr2 (117-216)||(41763332-41763435)
chr2 (120-180)||(9647899-9647959)
chr2 (117-180)||(41197519-41197582)
chr2 (126-180)||(6238054-6238108)
chr2 (121-179)||(17581397-17581455)
chr2 (117-210)||(12734599-12734692)
chr2 (117-178)||(23997547-23997608)
chr2 (117-174)||(44411650-44411707)
chr2 (73-180)||(38434879-38434984)
chr2 (31-91)||(41858746-41858806)
[»] scaffold0036 (1 HSPs)
scaffold0036 (117-180)||(4563-4626)
[»] scaffold0157 (1 HSPs)
scaffold0157 (62-183)||(25683-25802)
[»] scaffold0024 (1 HSPs)
scaffold0024 (60-180)||(82649-82767)
[»] scaffold0113 (1 HSPs)
scaffold0113 (51-180)||(11823-11952)


Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 9568750 - 9568500
Alignment:
Q  18 cttaccacataatctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgc 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  9568750 cttaccacataatctacatgtcttccctctagttgcccaaaccatctaagtccattttccatcatcttttctactataagtgctacctcaacactggcgc 9568651  T
Q  118 tctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcctaatgtgcgctccactttattctcgtgttggttcttat 217  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9568650 tctaatgttgtcatttataattctatcatgtctagtcttaccacacatccaacgcaacatcctaatgtgcgctccactttgttctcgtgttggttcttat 9568551  T
Q  218 caatgtgttgtctaaaataaataattatataacgctaacaaatatatttaa 268  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9568550 caatgtgttgtcgaaaataaataattatataacgctaacaaatatatttaa 9568500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 28085445 - 28085304
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  || ||| |||||||||| | |||||| | || ||||||||| ||| |||||||| |  |||| || |||||||| |||||||  ||    
T  28085445 gtcttctctctacatggccaaaccatctaagcctattttctaccaacttttctactataggtgctacccc--cactctctctctaatggtgtcattcgta 28085348  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    || ||||||||||||||||||| || ||||||||||||||||||    
T  28085347 atcctatcatgtctagtcttaccactcatccaacgcaacatcct 28085304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 32755990 - 32755847
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    ||||||||||||  || ||| |||||||||| | |||||| | || ||||||||| ||| |||||||| | || || || |||||||| |||||||  ||    
T  32755990 gtcttccctctacatgaccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctctaatggtgtcattccta 32755891  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||  |||||||||||||||||| || |||||||| |||||||||    
T  32755890 atattatcatgtctagtcttaccactcatccaacacaacatcct 32755847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 177
Target Start/End: Original strand, 5258352 - 5258501
Alignment:
Q  28 aatctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttg 127  Q
    |||||||  |||||| |||||  || ||| |||||||||| | |||||| | || ||||||||| ||| |||||||| | || || || |||||| | ||    
T  5258352 aatctacgggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctctaacggtg 5258451  T
Q  128 tcatttataattctatcatgtctagtcttacaacacatccaacgcaacat 177  Q
    ||||| ||||| ||||| ||||||||||||| || |||||||||||||||    
T  5258452 tcattcataatcctatcttgtctagtcttaccactcatccaacgcaacat 5258501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 180
Target Start/End: Complemental strand, 9706824 - 9706704
Alignment:
Q  58 accatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtctta 157  Q
    |||||||||| | |||||| | || ||||||||| ||| ||||||||||  |||| || |||||||| |||||||  |||| ||||||||||||||||||    
T  9706824 accatctaagcctattttctaccaacttttctacaataggtgctacctc--cactctctctctaatggtgtcattcctaatcctatcatgtctagtctta 9706727  T
Q  158 caacacatccaacgcaacatcct 180  Q
    | || ||||||  ||||||||||    
T  9706726 ccactcatccagtgcaacatcct 9706704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 33084111 - 33083986
Alignment:
Q  53 cccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctag 152  Q
    |||| |||| ||||||| | |||| | |||||||||||| ||| |||||||| |||| || ||  |||||| | ||||||| ||||||||||   |||||    
T  33084111 cccaaaccacctaagtctagtttctaccatcttttctaccataggtgctaccccaactctctc--tctaatatcgtcatttctaattctatcccatctag 33084014  T
Q  153 tcttacaacacatccaacgcaacatcct 180  Q
    |||||| |||||||||||||| ||||||    
T  33084013 tcttaccacacatccaacgcagcatcct 33083986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 9568791 - 9568753
Alignment:
Q  18 cttaccacataatctacatgtcttccctctagttgccca 56  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9568791 cttaccacataatctacatgtcttccctctagttgccca 9568753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 180
Target Start/End: Original strand, 9593911 - 9594066
Alignment:
Q  29 atctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacac----tgtcgctctaatg 124  Q
    |||||||||||||| |||||  |||||| |||| ||||| | |||||| | |||||||||||| |   |||||||| |||| |    | || ||||||||    
T  9593911 atctacatgtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctactaatggtgctaccccaactccctctctctctctaatg 9594010  T
Q  125 ttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
     |||||||  |||| |||||  |||||||||||| || ||||||||||||||||||    
T  9594011 gtgtcattcctaatcctatcccgtctagtcttaccactcatccaacgcaacatcct 9594066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 33998295 - 33998356
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatc 178  Q
    ||||||||| ||||||| |||| ||||||  ||||||||||| |||||||||||||||||||    
T  33998295 ctctaatgtagtcatttctaatcctatcacatctagtcttaccacacatccaacgcaacatc 33998356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 216
Target Start/End: Complemental strand, 608234 - 608047
Alignment:
Q  29 atctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgt 128  Q
    ||||||| |||||| |||||  || ||| |||||||||| | |||||| |||| ||||||||| ||| ||| ||||   || ||    |||||||| |||    
T  608234 atctacaggtcttctctctacatgtccaaaccatctaagcctattttctatcaacttttctactataggtgataccctcactct----ctctaatggtgt 608139  T
Q  129 catttataattctatcatgtctagtcttacaacacatccaacgcaacatcctaatgtgcgctcc----actttattctcgtgttggttctta 216  Q
    ||||  |||| ||||| | ||||||||||| || ||||||||| |||||||| || | |||| |    |||||||||||||||||| |||||    
T  608138 cattcctaatcctatcctatctagtcttaccactcatccaacggaacatcctcatctccgctacacttactttattctcgtgttggctctta 608047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 4948625 - 4948677
Alignment:
Q  144 catgtctagtcttacaacacatccaacgcaacatcctaatgtgcgctccactt 196  Q
    ||||||||||||||| |||||||||| ||||||||||||| | |||| |||||    
T  4948625 catgtctagtcttaccacacatccaaagcaacatcctaatctccgctacactt 4948677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 4955596 - 4955648
Alignment:
Q  144 catgtctagtcttacaacacatccaacgcaacatcctaatgtgcgctccactt 196  Q
    ||||||||||||||| |||||||||| ||||||||||||| | |||| |||||    
T  4955596 catgtctagtcttaccacacatccaaagcaacatcctaatctccgctacactt 4955648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 180
Target Start/End: Original strand, 20427870 - 20427990
Alignment:
Q  58 accatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtctta 157  Q
    |||||||||| | |||||| | || ||||||||| ||| |||||||| |  |||| || |||||||| |||||||  |||| ||||| ||||| ||| ||    
T  20427870 accatctaagcctattttctaccaacttttctactataggtgctacccc--cactctctctctaatggtgtcattcctaatcctatcctgtcttgtccta 20427967  T
Q  158 caacacatccaacgcaacatcct 180  Q
    | || |||||| |||||||||||    
T  20427968 ccactcatccagcgcaacatcct 20427990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 176
Target Start/End: Original strand, 14389416 - 14389511
Alignment:
Q  73 tttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgc 172  Q
    |||||| |||||||||||||||| |||||||||||||    || ||||||| | |||||||  |||    || | ||||||||||| |||||||||||||    
T  14389416 tttccaccatcttttctacgataggtgctacctcaac----tctctctaatatggtcatttcaaat----tcctatctagtcttaccacacatccaacgc 14389507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 35043732 - 35043793
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatc 178  Q
    |||||||| ||||||| ||||| |||||||||||| |||||| |  |||||| |||||||||    
T  35043732 ctctaatggtgtcattcataatcctatcatgtctaatcttaccaatcatccagcgcaacatc 35043793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 51)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 51 - 216
Target Start/End: Complemental strand, 31459085 - 31458916
Alignment:
Q  51 tgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtct 150  Q
    |||||| |||| ||||| | |||||| | |||||||||||| ||| |||||||||| || ||||| |||||||| | |||||  |||| |||||||||||    
T  31459085 tgcccaaaccacctaagcctattttctaccatcttttctactataggtgctacctcgactctgtctctctaatggtatcattcctaatcctatcatgtct 31458986  T
Q  151 agtcttacaacacatccaacgcaacatcctaatgtgcgctcc----actttattctcgtgttggttctta 216  Q
    |||||||| || || ||||||||||||||| || || ||| |    |||||||| |||||||||||||||    
T  31458985 agtcttaccactcaaccaacgcaacatcctcatctgtgctacacttactttattttcgtgttggttctta 31458916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 180
Target Start/End: Complemental strand, 436306 - 436157
Alignment:
Q  29 atctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgt 128  Q
    ||||||| |||||| |||||  |||||| | |||||||| | |||||| | || ||||||||| ||| |||||||| |  |||| || |||||||| |||    
T  436306 atctacaggtcttctctctacatgcccaaatcatctaagcctattttctaccaacttttctactataggtgctacccc--cactctctctctaatggtgt 436209  T
Q  129 catttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||||  |||| ||||||||||||||||||| || ||||||||||||||||||    
T  436208 cattcttaatcctatcatgtctagtcttacgactcatccaacgcaacatcct 436157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 28 - 179
Target Start/End: Complemental strand, 41192914 - 41192763
Alignment:
Q  28 aatctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttg 127  Q
    |||||||| |||||| |||||  ||| || | || ||||||| | |||||| ||||||||||||  || |||||||| |||| || || |||||| | ||    
T  41192914 aatctacaggtcttctctctacatgcacaaatcacctaagtctagtttccaccatcttttctactgtaggtgctaccccaactctctctctctaacgctg 41192815  T
Q  128 tcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcc 179  Q
    |||||||||||| |||| |||||| || ||| ||||||||||||||||||||    
T  41192814 tcatttataattgtatcctgtctaatcataccacacatccaacgcaacatcc 41192763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 31960027 - 31960168
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| |||||||||| | |||||| | || ||||||||| ||| |||||||| |  |||| || |||||||| |||||||  ||    
T  31960027 gtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccc--cactctctctctaatggtgtcattccta 31960124  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    || ||||| ||||||||||||| || ||||||||||||||||||    
T  31960125 atcctatcctgtctagtcttaccactcatccaacgcaacatcct 31960168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 53707863 - 53707722
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| |||||||||| | |||||| | || ||||||||| ||| ||||||||||  |||| ||  ||||||| |||||||  ||    
T  53707863 gtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacctc--cactctctttctaatggtgtcattccta 53707766  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
     | ||||||||||||||||||| || ||||||||||||||||||    
T  53707765 gtcctatcatgtctagtcttactactcatccaacgcaacatcct 53707722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 25257870 - 25257929
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaaca 176  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||    
T  25257870 ctctaatgttgtcatttctaattctatcatgtctagtcttactacacatccaacacaaca 25257929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 54470295 - 54470135
Alignment:
Q  18 cttaccacataatctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgc 117  Q
    ||||| ||||||| ||||||||||| |||||  |||||| ||||  |||||| | |||||| |||||||||||| ||| |||||||| ||  ||| || |    
T  54470295 cttactacataatttacatgtcttctctctacatgcccaaaccacttaagtctagtttccaccatcttttctactataggtgctacccca--actctctc 54470198  T
Q  118 tctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||||||||||| ||||  |||  ||||   ||||||||||| |||||||||| ||||||||||    
T  54470197 tctaatgttgttatttcaaatcatatcccatctagtcttaccacacatccaatgcaacatcct 54470135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 4440941 - 4440780
Alignment:
Q  18 cttaccacataatctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgc 117  Q
    |||||||||  ||||||  |||||| |||||| |||||| |||||||||| | |||||| | || ||||||||| ||| ||||| || | || ||    |    
T  4440941 cttaccacagcatctacgggtcttctctctagatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctgcccccactct----c 4440846  T
Q  118 tctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcctaat 183  Q
    ||||||| || ||||  |||| ||||||||||||||||||| || |||| ||||||||||||||||    
T  4440845 tctaatggtgccattcctaatcctatcatgtctagtcttaccactcatcgaacgcaacatcctaat 4440780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 33227278 - 33227137
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| || ||||||| | |||||| | || ||||||||| ||| |||||||| |  |||| || |||||||| |||||||  ||    
T  33227278 gtcttctctctacatgcccaaacaatctaagcctattttctaccaacttttctactataggtgctacccc--cactctctctctaatggtgtcattctta 33227181  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    || ||||||||||||||||||| || |||||| |||||||||||    
T  33227180 atcctatcatgtctagtcttaccactcatccagcgcaacatcct 33227137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 177
Target Start/End: Complemental strand, 37797900 - 37797783
Alignment:
Q  58 accatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtctta 157  Q
    |||||||||| | |||||| | || ||||||||| ||| ||||||||||  |||| || |||||||| |||||||| ||||  |||||||||||||||||    
T  37797900 accatctaagcctattttctaccaacttttctactataggtgctacctc--cactctctctctaatggtgtcatttctaatcttatcatgtctagtctta 37797803  T
Q  158 caacacatccaacgcaacat 177  Q
      || |||||||||||||||    
T  37797802 tcactcatccaacgcaacat 37797783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 180
Target Start/End: Complemental strand, 12494794 - 12494678
Alignment:
Q  62 tctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtcttacaac 161  Q
    |||||| | |||||| | || ||||||||| ||| |||||||| |  |||| || |||||||| |||||||  |||| ||||||||||||||||||| ||    
T  12494794 tctaagcctattttctaccaacttttctactataggtgctacccc--cactctctctctaatggtgtcattcctaatcctatcatgtctagtcttaccac 12494697  T
Q  162 acatccaacgcaacatcct 180  Q
     ||||||||||||||||||    
T  12494696 tcatccaacgcaacatcct 12494678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 24 - 180
Target Start/End: Complemental strand, 17900562 - 17900408
Alignment:
Q  24 acataatctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaat 123  Q
    |||||||| ||| |||||| |||||  |||||| ||||  | |||| | |||| | | |||||||||| ||| |||||||| |||| | |||  ||||||    
T  17900562 acataatccacaggtcttctctctacgtgcccaaaccacatgagtctagtttctaccgtcttttctactataggtgctaccccaactccgtc--tctaat 17900465  T
Q  124 gttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    || ||||||| ||||| ||||   ||||||||||| |||||||||||||||||||||    
T  17900464 gtcgtcatttctaattttatcccatctagtcttaccacacatccaacgcaacatcct 17900408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 21106972 - 21106912
Alignment:
Q  120 taatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||||||||| ||||||||||| |||||||||||| ||||||| ||| |||||||||    
T  21106972 taatgttgtcatttctaattctatcacgtctagtcttaccacacatcgaacccaacatcct 21106912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 48174306 - 48174447
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| | |||||||| | |||||| | || ||||||||| ||| ||| |||| |  |||| || |||||||| |||||||  ||    
T  48174306 gtcttctctctacatgcccaaatcatctaagcctattttctaccaacttttctactataggtgttacccc--cactctctctctaatggtgtcattccta 48174403  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||  |||||||||||||||||| || ||||||||||||||||||    
T  48174404 atcatatcatgtctagtcttaccactcatccaacgcaacatcct 48174447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 52569728 - 52569869
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| |||||||||| | |||||| | || ||||||||| ||| |||||||| |  |||| || |||||||| |||||||  ||    
T  52569728 gtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccc--cactctctctctaatggtgtcattccta 52569825  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    || ||||| |||||||||||||  | |||||||| |||||||||    
T  52569826 atcctatcctgtctagtcttacccctcatccaacacaacatcct 52569869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 1777306 - 1777369
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||| |||||||  |||| ||||||||||||||||||| || ||||||||||||||||||    
T  1777306 ctctaatggtgtcattcctaatcctatcatgtctagtcttaccactcatccaacgcaacatcct 1777369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 25967558 - 25967621
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||||||||| ||||||| |||| ||| ||||||||||||||| ||||||||| |||||||||||    
T  25967558 ctctaatgtagtcatttctaatcctaccatgtctagtcttaccacacatccatcgcaacatcct 25967621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 180
Target Start/End: Original strand, 51252665 - 51252813
Alignment:
Q  28 aatctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttg 127  Q
    |||| |||||||||| |||||  |||||| |||| ||||| | | |||||| |||||||||||| | | |||||||| |||| ||    ||||||||| |    
T  51252665 aatccacatgtcttctctctacatgcccataccacctaagcctagtttccaccatcttttctactagaggtgctaccccaactct----ctctaatgtag 51252760  T
Q  128 tcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||| |||| |||||  |||||||||||| ||||||| ||| ||| |||||    
T  51252761 tcatttctaatcctatctcgtctagtcttacgacacatctaacacaaaatcct 51252813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 18966541 - 18966483
Alignment:
Q  120 taatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatc 178  Q
    ||||||||||||||||||| ||||  |||||| |||||| |||||||||||||||||||    
T  18966541 taatgttgtcatttataatcctattttgtctaatcttaccacacatccaacgcaacatc 18966483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 28497577 - 28497452
Alignment:
Q  18 cttaccacataatctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgc 117  Q
    ||||| |||||||||||| |||||| |||||  |||||| |||| ||||| || |||||||  ||||||||||| | | |||||||| |||| || || |    
T  28497577 cttactacataatctacaagtcttctctctacatgcccaaaccacctaag-cctttttccacaatcttttctactaaaggtgctaccccaactctctctc 28497479  T
Q  118 tctaatgttgtcatttataattctatc 144  Q
    ||| |||||||||||| |||| |||||    
T  28497478 tctgatgttgtcatttctaatcctatc 28497452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 48622756 - 48622895
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| |||||||||| | |||||| | || ||||||||| ||  |||||||| | || ||    |||||||| |||||||  ||    
T  48622756 gtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactatgggtgctacccccactct----ctctaatggtgtcattccta 48622851  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    || ||||||||||||||||||| || ||||||| ||||||||||    
T  48622852 atcctatcatgtctagtcttaccactcatccaaagcaacatcct 48622895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 49987418 - 49987356
Alignment:
Q  118 tctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||||||||||| |||| ||||||||||||||||||| | |||| |||| |||||||||    
T  49987418 tctaatgttgtcatttctaatcctatcatgtctagtcttactaaacattcaacacaacatcct 49987356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 174
Target Start/End: Complemental strand, 51421785 - 51421666
Alignment:
Q  51 tgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtct 150  Q
    |||||| |||| ||||| | |||||| |||||||  ||||| ||| |||||||| |||||||    |||||||| ||||||| ||||| |||||  ||||    
T  51421785 tgcccaaaccacctaagcctattttctatcatctaatctactatatgtgctaccccaacact----ctctaatggtgtcattcataatcctatctcgtct 51421690  T
Q  151 agtcttacaacacatccaacgcaa 174  Q
    |||||||| || ||||||||||||    
T  51421689 agtcttactactcatccaacgcaa 51421666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 2588970 - 2588909
Alignment:
Q  119 ctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||||||||||||||| |||| |||||   ||||||||||| |||||||||||||||||||||    
T  2588970 ctaatgttgtcatttctaatcctatcccttctagtcttaccacacatccaacgcaacatcct 2588909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 33191061 - 33191202
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| || ||||||||| |||||| | || ||||||||| ||| |||||||| |  |||| || |||||||| |||||||  ||    
T  33191061 gtcttctctctacatgcccaaacaatctaagtctattttctaccaacttttctactataggtgctacccc--cactctctctctaatggtgtcattccta 33191158  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    || ||||| | |||| |||||| || |||||| |||||||||||    
T  33191159 atcctatcctatctaatcttaccactcatccagcgcaacatcct 33191202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 37773741 - 37773801
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacat 177  Q
    |||||||| | ||||| ||||||||||||||||||||||||| || |||||| ||||||||    
T  37773741 ctctaatggtatcattcataattctatcatgtctagtcttaccactcatccagcgcaacat 37773801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 40933188 - 40933289
Alignment:
Q  118 tctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcctaatgtgcgctccac----tttattctcgtgttggttc 213  Q
    |||||| || |||||| |||||||||||||| | ||||||| |||||| |||||||||||||| || | |||| |||    |||| ||||||||||||||    
T  40933188 tctaatattttcatttctaattctatcatgtattgtcttaccacacattcaacgcaacatcctcatctacgctacacttattttactctcgtgttggttc 40933287  T
Q  214 tt 215  Q
    ||    
T  40933288 tt 40933289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 43070055 - 43070115
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacat 177  Q
    ||||||||||||||||| |||| ||||| |||||| |||||| ||||||||||| ||||||    
T  43070055 ctctaatgttgtcatttctaatcctatcctgtctaatcttaccacacatccaacccaacat 43070115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 45423607 - 45423547
Alignment:
Q  120 taatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||||||||| ||||||||||  |||||||||||| ||||| ||||| |||||||||    
T  45423607 taatgttgtcatttctaattctatcccgtctagtcttaccacacaaccaacacaacatcct 45423547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 178
Target Start/End: Complemental strand, 33709957 - 33709849
Alignment:
Q  73 tttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata-----attctatcatgtctagtcttacaacacatcc 167  Q
    |||||| |||||||||||| ||| ||| |||| ||  ||| || ||||||||||| ||||| ||     || ||||||||||||||||||| ||||||||    
T  33709957 tttccaccatcttttctactataggtgttacccca--actctctctctaatgttgccatttctaatcctatcctatcatgtctagtcttaccacacatcc 33709860  T
Q  168 aacgcaacatc 178  Q
    |||||||||||    
T  33709859 aacgcaacatc 33709849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 50286962 - 50286899
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||| |||||||  |||| ||||||||||||||||||| || ||||||||||||| ||||    
T  50286962 ctctaatggtgtcattcctaatcctatcatgtctagtcttaccactcatccaacgcaacttcct 50286899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 1380455 - 1380296
Alignment:
Q  18 cttaccacataatctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgc 117  Q
    ||||| ||| |||||||| || ||| |||||  |||||| |||| ||||| | | |||| ||||| ||||||||| || ||| || | |||| || ||      
T  1380455 cttactacaaaatctacaggttttctctctacgtgcccaaaccacctaagccgagtttctatcatgttttctacggtaggtgttatcccaactctctc-- 1380358  T
Q  118 tctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcc 179  Q
    ||||||||||||  || |||||||||| ||||  |||| ||||||||||||| |||||||||    
T  1380357 tctaatgttgtccattctaattctatcgtgtcaggtctaacaacacatccaatgcaacatcc 1380296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 43433993 - 43433846
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctct----aatgttgtcatt 132  Q
    |||||| |||||  |||||| |||||||||| | |||||| | || ||||||||| ||| |||||||| | || || || ||||    |||| |||||||    
T  43433993 gtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctctctctaatggtgtcatt 43433894  T
Q  133 tataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
      |||| ||||| ||||||||||| | || ||||||||||||||||||    
T  43433893 cctaatcctatcttgtctagtcttgccactcatccaacgcaacatcct 43433846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 20105762 - 20105823
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatc 178  Q
    ||||||||||||||||| ||||  ||||  |||||||||||| ||||||||| |||||||||    
T  20105762 ctctaatgttgtcatttctaatcatatctcgtctagtcttaccacacatccatcgcaacatc 20105823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 45185308 - 45185361
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaac 170  Q
    ||||||||||||||||| ||||||||||   ||||||||||| |||||||||||    
T  45185308 ctctaatgttgtcatttctaattctatctcatctagtcttactacacatccaac 45185361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 46715572 - 46715649
Alignment:
Q  24 acataatctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgct 101  Q
    |||||||| |||||||||| |||||  ||||||||||| ||||| | | |||||| |||||||||||| ||| |||||    
T  46715572 acataatccacatgtcttctctctacatgcccacaccacctaagcctagtttccaccatcttttctacaataggtgct 46715649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 10209029 - 10208977
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaa 169  Q
    ||||||||||||||||| ||||||||||   ||||||||||| ||||||||||    
T  10209029 ctctaatgttgtcatttctaattctatcccatctagtcttaccacacatccaa 10208977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 180
Target Start/End: Original strand, 27450413 - 27450527
Alignment:
Q  58 accatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtctta 157  Q
    |||||||||| | |||||| | || ||||||||| ||| |||||||| | || ||    |||||||| |||||||    |||||||||||||||||||||    
T  27450413 accatctaagcctattttctaccaacttttctactataggtgctacccccactct----ctctaatggtgtcatt----attctatcatgtctagtctta 27450504  T
Q  158 caacacatccaacgcaacatcct 180  Q
    | || |||||| |||||||||||    
T  27450505 ccactcatccagcgcaacatcct 27450527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 31452402 - 31452450
Alignment:
Q  130 atttataattctatcatgtctagtcttacaacacatccaacgcaacatc 178  Q
    |||| |||||||||||||||| ||||||||| |||||||| ||||||||    
T  31452402 atttttaattctatcatgtcttgtcttacaatacatccaatgcaacatc 31452450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 47265496 - 47265556
Alignment:
Q  120 taatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||||| ||||||| |||||  |||||||||||||||||| || |||||| |||||||||||    
T  47265496 taatggtgtcattcataatcttatcatgtctagtcttaccactcatccagcgcaacatcct 47265556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 56375359 - 56375218
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| |||||||||| |  ||||| | || ||||||||  ||| |||||||| | || || ||  ||||||| |||||||  ||    
T  56375359 gtcttctctctacatgcccaaaccatctaagcctgttttctaccaacttttctattataggtgctacccctactctctc--tctaatggtgtcattccta 56375262  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||  |||| ||||||||||||| || ||||||||||||||||||    
T  56375261 atcttatcttgtctagtcttaccactcatccaacgcaacatcct 56375218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 178
Target Start/End: Original strand, 10775678 - 10775774
Alignment:
Q  80 catcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatc 178  Q
    |||||||||||| ||| ||| |||| ||||||| ||  |||||||||||||||| ||||||| || ||||| ||| | | || |||||||| |||||||    
T  10775678 catcttttctactataggtgttaccccaacactctc--tctaatgttgtcatttctaattctttcctgtctggtcctgccacgcatccaacacaacatc 10775774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 23906592 - 23906655
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||| |||||||  |||| ||||| ||||||||||| | || ||||||||||||||||||    
T  23906592 ctctaatggtgtcattcctaatcctatcttgtctagtcttgccactcatccaacgcaacatcct 23906655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 25755406 - 25755248
Alignment:
Q  17 acttaccacataatctacatgtcttccctctagttgcccacaccatctaagtccattttccatcat-cttttctacgataagtgctacctcaacactgtc 115  Q
    |||||| |||||||||| | |||||| |||||  || ||| |||||||| | | |||||||| | | |||||||| |||| |||||||| |||| || |     
T  25755406 acttacaacataatctataggtcttcgctctacgtgtccaaaccatctatgccgattttccacctttcttttctaagataggtgctaccccaactcttt- 25755308  T
Q  116 gctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacat 177  Q
      |||| |||| ||||||  |||  |||||||||||||||||| ||||||| ||| ||||||    
T  25755307 --tctattgttttcatttccaatcatatcatgtctagtcttaccacacatctaacacaacat 25755248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 178
Target Start/End: Original strand, 34233291 - 34233385
Alignment:
Q  84 ttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatc 178  Q
    |||||||| ||| |||||| | |||| || |  ||||||||||||| ||| |||| ||||||  ||||||||||  ||||||||||| |||||||    
T  34233291 ttttctactataggtgctatcccaactctctatctctaatgttgtcgtttctaatcctatcacatctagtcttatcacacatccaacacaacatc 34233385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 41009643 - 41009704
Alignment:
Q  119 ctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||| |||||||| |||| ||| |||||||||||||||    ||||||||||||||||||    
T  41009643 ctaatgatgtcatttctaatcctaccatgtctagtcttaccgatcatccaacgcaacatcct 41009704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 49739106 - 49739147
Alignment:
Q  138 ttctatcatgtctagtcttacaacacatccaacgcaacatcc 179  Q
    ||||| ||||||||||||||| ||||||| ||||||||||||    
T  49739106 ttctaccatgtctagtcttaccacacatctaacgcaacatcc 49739147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 51841502 - 51841543
Alignment:
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatc 178  Q
    |||||||| ||||||||||||| ||||||||||| |||||||    
T  51841502 attctatcttgtctagtcttaccacacatccaacacaacatc 51841543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 17668406 - 17668462
Alignment:
Q  121 aatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacat 177  Q
    ||||||||||||||||||  ||||   |||||| |||| ||||||||||||||||||    
T  17668406 aatgttgtcatttataatcttatctcatctagttttaccacacatccaacgcaacat 17668462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 177
Target Start/End: Complemental strand, 44360113 - 44360014
Alignment:
Q  80 catcttttctacgataagtgctacctcaacactgtcgc--tctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacat 177  Q
    |||||||||||| ||| ||| |||| |||| || || |  |||||| ||||||||| ||||||||||  | |||||| ||| ||||||||||| ||||||    
T  44360113 catcttttctactataggtgataccccaactctctctccatctaatattgtcatttctaattctatctcgcctagtcctaccacacatccaacacaacat 44360014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 45094464 - 45094516
Alignment:
Q  128 tcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||| |||| ||||| |||||||| |||| ||||||||||| |||||||||    
T  45094464 tcatttctaatactatcttgtctagtattactacacatccaacacaacatcct 45094516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 29 - 180
Target Start/End: Complemental strand, 52138877 - 52138728
Alignment:
Q  29 atctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgt 128  Q
    ||||||| |||||| |||||  |||||| |||||||||| | |||||| | || ||||||||| ||| |||||||| |  |||| || |||||||| |||    
T  52138877 atctacaggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccc--cactctctctctaatggtgt 52138780  T
Q  129 catttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||||  |||| ||||||||||||||||||| || ||||||||||||||||||    
T  52138779 cattcctaatcctatcatgtctagtcttaccactcatccaacgcaacatcct 52138728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 180
Target Start/End: Original strand, 2340961 - 2341068
Alignment:
Q  71 attttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaac 170  Q
    |||||||| ||||||||||||||   |||||||| ||||||  ||  ||||||||| |||||| |||||||||||||||||||||||| ||||||||||     
T  2340961 attttccaccatcttttctacgaatggtgctaccccaacaccctc--tctaatgttttcatttctaattctatcatgtctagtcttaccacacatccaat 2341058  T
Q  171 gcaacatcct 180  Q
    ||||||||||    
T  2341059 gcaacatcct 2341068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 47233809 - 47233950
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  || ||| |||||||||| | |||||| | || ||||||||| ||| ||||||||||  || | || |||||||| |||||||| ||    
T  47233809 gtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacctc--cattctctctctaatggtgtcatttcta 47233906  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||  |||||||||||||||||| || |||||||||||| |||||    
T  47233907 atcttatcatgtctagtcttaccactcatccaacgcaatatcct 47233950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 180
Target Start/End: Complemental strand, 54128455 - 54128306
Alignment:
Q  29 atctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgt 128  Q
    ||||||| |||||  |||||  |||||| |||| ||||| | |||||| | |||||||||||| ||| |||||||| ||||||| ||  ||||||| |||    
T  54128455 atctacaggtcttttctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctaccccaacactctc--tctaatggtgt 54128358  T
Q  129 catttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||| ||||| |||||  ||||||| |||| || |||| |||||||||||||    
T  54128357 cattcataatcctatcgcgtctagttttaccactcatcaaacgcaacatcct 54128306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 180
Target Start/End: Complemental strand, 28245492 - 28245365
Alignment:
Q  51 tgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtct 150  Q
    |||||| |||||||||||| |||||| | || ||||||||| ||| |||||||| |  |||| || |||||||| |||||||  |||| |||||  | ||    
T  28245492 tgcccaaaccatctaagtctattttctaccaacttttctactataggtgctacccc--cactctctctctaatgatgtcattcctaatcctatccaggct 28245395  T
Q  151 agtcttacaacacatccaacgcaacatcct 180  Q
    |||||||| || ||||||||||||||||||    
T  28245394 agtcttaccactcatccaacgcaacatcct 28245365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 45236853 - 45236781
Alignment:
Q  111 ctgtcgctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcctaat 183  Q
    ||||| |||||||| |||||||| ||||  ||||  |||||||||||| ||||||||||||||||||||||||    
T  45236853 ctgtctctctaatggtgtcatttctaatcatatccagtctagtcttaccacacatccaacgcaacatcctaat 45236781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 54279089 - 54278948
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| ||| |||||| | |||||| | || ||||||||| ||| |||||||| | || || ||  ||||||| |||||||  ||    
T  54279089 gtcttctctctacgtgcccaaaccgtctaagcctattttctaccaacttttctactataggtgctacccctactctctc--tctaatggtgtcattccta 54278992  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||| ||||||||||||| ||  |||||||||||||||||    
T  54278991 attctatcttgtctagtcttaccacttatccaacgcaacatcct 54278948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 33272235 - 33272382
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataa----gtgctacctcaacactgtcgctctaatgttgtcatt 132  Q
    |||||| |||||  |||||| |||||||||| | |||||| | || ||||||||| |||     |||||||| | || || || |||||||| |||||||    
T  33272235 gtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactatatataggtgctacccccactctctctctctaatggtgtcatt 33272334  T
Q  133 tataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
      |||| ||||||||||||||||||| || ||||||| ||||||||||    
T  33272335 cttaatcctatcatgtctagtcttaccactcatccaatgcaacatcct 33272382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 344958 - 345068
Alignment:
Q  71 attttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaac 170  Q
    |||||| | |||||||||||| |||||||||||| |||| || ||  ||||||||  |||||| |||| |||||  |||||||||||| ||| |||||||    
T  344958 attttctaacatcttttctactataagtgctaccccaactctctc--tctaatgtcatcatttctaatcctatctcgtctagtcttaccacaaatccaac 345055  T
Q  171 gcaacatcctaat 183  Q
      |||||||||||    
T  345056 ataacatcctaat 345068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 180
Target Start/End: Original strand, 51447924 - 51448063
Alignment:
Q  38 tcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataa 137  Q
    ||||| |||||  |||||| || ||||||| | |||||| | || ||||||||| ||| ||||||||  |   || || |||||||| |||||||  |||    
T  51447924 tcttctctctacatgcccaaactatctaagcctattttctaccaacttttctactataggtgctacccta---ctctctctctaatggtgtcattcctaa 51448020  T
Q  138 ttctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    | ||||| ||||||||||||| || ||||||||||||||||||    
T  51448021 tcctatcctgtctagtcttaccactcatccaacgcaacatcct 51448063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 36820250 - 36820309
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaaca 176  Q
    ||||||||| ||||||| |||| |||||  |||||||||||| |||||||||||||||||    
T  36820250 ctctaatgtcgtcatttctaatcctatctcgtctagtcttaccacacatccaacgcaaca 36820309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 46568107 - 46568044
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||||||||||||||||| |||||| |||  |||||||||||  ||||||||||| |||||||||    
T  46568107 ctctaatgttgtcatttctaattcaatctggtctagtcttaacacacatccaacacaacatcct 46568044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 22096 - 22001
Alignment:
Q  83 cttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||||||||| ||| |||||||| |  |||| || |||||||| || ||||  |||| ||||||||||||||||||| || |||||| |||||||||||    
T  22096 cttttctactataggtgctacccc--cactctctctctaatggtgacattcctaatcctatcatgtctagtcttaccactcatccagcgcaacatcct 22001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 50249465 - 50249311
Alignment:
Q  28 aatctacatgtcttccctctagttgccca---caccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatg 124  Q
    ||||||||||||||| |||||  ||||||   ||||| ||||||| | |||||| |||||||||||| ||| | |||||| ||  ||| || ||||||||    
T  50249465 aatctacatgtcttcactctacatgcccaaaccaccacctaagtctagtttccaccatcttttctactatacgcgctacccca--actctctctctaatg 50249368  T
Q  125 ttgtcattt---ataattctatcatgtctagtcttacaacacatccaacgcaacatc 178  Q
    || ||||||   || || |||||  |||||||| ||| |||||||||||| ||||||    
T  50249367 ttatcatttctaatcatcctatctcgtctagtcctaccacacatccaacgaaacatc 50249311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 21200626 - 21200563
Alignment:
Q  28 aatctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctac 91  Q
    ||||||||||||||| |||||  |||||| |||| ||||||| | |||||| ||||||||||||    
T  21200626 aatctacatgtcttctctctacatgcccaaaccacctaagtctagtttccaccatcttttctac 21200563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 25191370 - 25191307
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||| |||||||  ||||  |||||||||||||||||| || |||||| |||||||||||    
T  25191370 ctctaatgatgtcattcttaatcatatcatgtctagtcttaccactcatccagcgcaacatcct 25191307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 45289285 - 45289434
Alignment:
Q  18 cttaccacataatctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctac--gataagtgctacctcaacactgtc 115  Q
    ||||| ||| |||||||| || ||| |||||  |||||| |||| ||||| | |||||||| ||||||||||||   ||| |||||||| |||| || ||    
T  45289285 cttactacaaaatctacaagtgttctctctacgtgcccaaaccacctaagcctattttccaccatcttttctactgaataggtgctaccccaactctctc 45289384  T
Q  116 gctctaatgttgtcatttataattctatcatgtctagtcttacaacacatc 166  Q
     |||||||| |||||||| ||||  ||||  |||||||||||  |||||||    
T  45289385 tctctaatg-tgtcatttctaatcttatcccgtctagtcttatcacacatc 45289434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 216
Target Start/End: Complemental strand, 30345505 - 30345415
Alignment:
Q  126 tgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcctaatgtgcgctccactttattctcgtgttggttctta 216  Q
    ||||||| |||||||||||||||| | ||||||  | |||||||| ||||||||| || | ||||  |||| ||| || ||||||||||||    
T  30345505 tgtcattcataattctatcatgtccaatcttaccgctcatccaacacaacatcctcatctccgctatacttaattttcatgttggttctta 30345415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 53519576 - 53519514
Alignment:
Q  118 tctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||||||| |||||||  |||| ||||| |||||||| |||| || ||||||||||||||||||    
T  53519576 tctaatggtgtcattcttaatcctatcctgtctagtattaccactcatccaacgcaacatcct 53519514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 46431967 - 46432024
Alignment:
Q  122 atgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcc 179  Q
    |||| ||||||| |||  ||||| ||||||||||||| |||||||||| |||||||||    
T  46431967 atgtagtcatttctaaccctatcctgtctagtcttaccacacatccaatgcaacatcc 46432024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 169
Target Start/End: Original strand, 49503767 - 49503897
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| |||| ||||| | |||||| | |||||||||||| ||| ||||||||| |  ||| || |||||||| |||||||   |    
T  49503767 gtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctacctga--actctctctctaatggtgtcattccca 49503864  T
Q  137 attctatcatgtctagtcttacaacacatccaa 169  Q
    || |||||  |||||||||||| || |||||||    
T  49503865 atcctatctcgtctagtcttaccactcatccaa 49503897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 49841600 - 49841539
Alignment:
Q  119 ctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||||||||||||||| ||||  || |  |||||||||||| ||||||||||| |||||||||    
T  49841600 ctaatgttgtcatttctaatcttacctcgtctagtcttactacacatccaacacaacatcct 49841539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 38054628 - 38054688
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacat 177  Q
    |||||||||| |||||| |||| |||||  |||||||||||| || ||| |||||||||||    
T  38054628 ctctaatgttatcatttctaatcctatcccgtctagtcttaccacccattcaacgcaacat 38054688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 34869489 - 34869348
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| |||||||||| | |||||| | || ||||||||| ||| |||||||| |  |||| || |||||||| |||||||  ||    
T  34869489 gtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccc--cactctctctctaatggtgtcattccta 34869392  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    || ||||||||||||||||||| || ||||||||||||||||||    
T  34869391 atcctatcatgtctagtcttaccactcatccaacgcaacatcct 34869348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 35906414 - 35906555
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| |||||||||| | |||||| | || ||||||||| ||| ||||||||||  |||| || |||||||| |||||||  ||    
T  35906414 gtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacctc--cactctctctctaatggtgtcattccta 35906511  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    || ||||| ||||||||||||| || ||||||||||||||||||    
T  35906512 atcctatcctgtctagtcttaccactcatccaacgcaacatcct 35906555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 13859221 - 13859362
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| |||||||||| | |||||| | || ||||||||| ||| |||||||| |  |||| || |||||||| |||||||  ||    
T  13859221 gtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccc--cactctctctctaatggtgtcattccta 13859318  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    || ||||||||||||||||||| || | ||||||||||||||||    
T  13859319 atcctatcatgtctagtcttaccactcgtccaacgcaacatcct 13859362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 51 - 180
Target Start/End: Original strand, 36514434 - 36514559
Alignment:
Q  51 tgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtct 150  Q
    |||||| |||| ||||||| | |||| | |||||||||||| ||| |||||||| |||| ||    ||||||||||||| ||| ||||||||||  || |    
T  36514434 tgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccccaactct----ctctaatgttgtcctttctaattctatcccgttt 36514529  T
Q  151 agtcttacaacacatccaacgcaacatcct 180  Q
    |||||||| |||||||||||||||||||||    
T  36514530 agtcttaccacacatccaacgcaacatcct 36514559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 49029345 - 49029204
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| |||||||||| | |||||| | || ||||||||| ||| |||||||| |  |||| || |||||||| |||||||  ||    
T  49029345 gtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccc--cactctctctctaatggtgtcattccta 49029248  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    || ||||||||||||||||||| || ||||||||| ||||||||    
T  49029247 atcctatcatgtctagtcttaccactcatccaacgtaacatcct 49029204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 180
Target Start/End: Complemental strand, 39812035 - 39811885
Alignment:
Q  28 aatctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttg 127  Q
    ||||||||| ||||| |||||  |||||| || | ||||| | | ||| || ||| ||||||| |||| ||||| || |||| || ||  ||||||||||    
T  39812035 aatctacatctcttctctctacatgcccaaactacctaagccgagttttcaccattttttctatgataggtgctgccccaactctctc--tctaatgttg 39811938  T
Q  128 tcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||| |||| |||||| |||||||||||| |||||||||| ||||||||||    
T  39811937 tcatttctaatcctatcacgtctagtcttaccacacatccaaagcaacatcct 39811885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 12841488 - 12841629
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| |||||||||| | |||||| | || ||||||||| ||| ||||||||||  |||| || ||||||||  ||||||  ||    
T  12841488 gtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacctc--cactctctctctaatggggtcattccta 12841585  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    || |||||||||||||| |||| || |||||||| |||||||||    
T  12841586 atcctatcatgtctagttttaccactcatccaacacaacatcct 12841629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 33350019 - 33350160
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| |||||||||| | |||||| | || ||||||||| ||| |||| ||| |  |||| || |||||||| |||||||  ||    
T  33350019 gtcttctctctacatgcccaaaccatctaagcctattttctagcaacttttctactataggtgcaacccc--cactctctctctaatggtgtcattctta 33350116  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    || ||||||||||||||||||| || ||||||| ||||||||||    
T  33350117 atcctatcatgtctagtcttaccactcatccaaggcaacatcct 33350160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 43282431 - 43282333
Alignment:
Q  83 cttttctacgataagtgctacctcaacactgtcgctctaa-tgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||||||||| ||| |||||||| |||| || || |||||| ||||||||||| ||||  |||||||||||| ||||| ||||||| |||||||||||||    
T  43282431 cttttctactataggtgctaccccaactctctctctctaaatgttgtcatttctaatcatatcatgtctagacttaccacacatctaacgcaacatcct 43282333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 38 - 178
Target Start/End: Complemental strand, 28021032 - 28020894
Alignment:
Q  38 tcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataa 137  Q
    ||||| |||||  |||||| |||| ||||| | | |||||| ||||||||||||||||||||||||| |||| || |  |||||||||| ||||||  ||    
T  28021032 tcttctctctacatgcccaaaccacctaagccaagtttccaccatcttttctacgataagtgctaccccaactcttt--ctctaatgttatcatttcgaa 28020935  T
Q  138 ttctatcatgtctagtcttacaacacatccaacgcaacatc 178  Q
    |  ||||||||| |||||||  ||||||| || ||||||||    
T  28020934 tcatatcatgtccagtcttatcacacatctaatgcaacatc 28020894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 37618014 - 37617872
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttcc-atcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttat 135  Q
    |||||| |||||  |||||| |||||||||| | ||||| | | || ||||||||| ||| |||||||| |  |||| || |||||||| |||||||  |    
T  37618014 gtcttctctctacatgcccaaaccatctaagcctatttttctaccaacttttctactataggtgctacccc--cactctctctctaatggtgtcattcct 37617917  T
Q  136 aattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||| ||||| ||||||||||||| || ||||||||||||||||||    
T  37617916 aatcctatcttgtctagtcttaccactcatccaacgcaacatcct 37617872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 31005292 - 31005151
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| |||||||||  | |||||| | || ||||||||| ||| |||||||| |  |||| || |||||||| ||| |||  ||    
T  31005292 gtcttctctctacatgcccaaaccatctaaacctattttctaccaacttttctactataggtgctacccc--cactctctctctaatggtgttattccta 31005195  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    || ||||| ||||||||||||| || ||||||||||||||||||    
T  31005194 atcctatcctgtctagtcttaccactcatccaacgcaacatcct 31005151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 46356050 - 46356209
Alignment:
Q  18 cttaccacataatctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgc 117  Q
    |||||||||  |||||| ||||||| |||||  |||||| |||||||||  | |||||| | || ||||||||| ||| |||||||| |  || | || |    
T  46356050 cttaccacaacatctacgtgtcttctctctacatgcccaaaccatctaaacctattttctaccaacttttctactataggtgctacccc--cattctctc 46356147  T
Q  118 tctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcc 179  Q
    ||| ||| |||||||  |||| ||||| ||||||||||||| || ||| |||||||||||||    
T  46356148 tctgatggtgtcattcctaatcctatcctgtctagtcttaccactcattcaacgcaacatcc 46356209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 180
Target Start/End: Complemental strand, 47848729 - 47848602
Alignment:
Q  51 tgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtct 150  Q
    |||||| |||| ||||| | |||||||| |||||||||||| ||| | |||||| |||| || ||  ||||||||| ||| || | || |||||  ||||    
T  47848729 tgcccaaaccacctaagcctattttccaccatcttttctactataggcgctaccccaactctctc--tctaatgttatcacttctgatcctatcccgtct 47848632  T
Q  151 agtcttacaacacatccaacgcaacatcct 180  Q
    |||||||| ||||||||||| |||||||||    
T  47848631 agtcttaccacacatccaacacaacatcct 47848602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 27021997 - 27022057
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacat 177  Q
    ||||||||||||||||| |||| ||||| ||||||||||||  |||||||||| |||||||    
T  27021997 ctctaatgttgtcatttttaatcctatcctgtctagtcttatcacacatccaatgcaacat 27022057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 178
Target Start/End: Complemental strand, 33073021 - 33072884
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| | |||||||| | |||||| | || ||||||||| ||| |||||||| | || ||    |||||||| |||||||  ||    
T  33073021 gtcttctctctacatgcccaaatcatctaagcctattttctaccaacttttctactataggtgctacccccactct----ctctaatggtgtcattccta 33072926  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatc 178  Q
    || ||||| ||||||||||||| || ||||||||||||||||    
T  33072925 atcctatcttgtctagtcttaccactcatccaacgcaacatc 33072884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 39906583 - 39906724
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| | |||||||| | |||||| | || ||||||||| ||| ||||||||    |||| || |||||||| |||||||  ||    
T  39906583 gtcttctctctacatgcccaaatcatctaagcctattttctaccaacttttctactataggtgctaccct--cactctctctctaatggtgtcattccta 39906680  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    || ||||| ||||||||||||| || ||||||||||| ||||||    
T  39906681 atcctatcctgtctagtcttaccactcatccaacgcagcatcct 39906724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 44855385 - 44855526
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| |||||||||| | |||||| | || ||||||||| ||| || ||| | |  |||| || |||||||| |||||||  ||    
T  44855385 gtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtactatccc--cactctctctctaatggtgtcattccta 44855482  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    || ||||||||||||||||||| || |||||| | |||||||||    
T  44855483 atcctatcatgtctagtcttaccactcatccagcacaacatcct 44855526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 45836693 - 45836834
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  || ||| |||||||||| | |||||| | || ||||||||| ||| |||||||| |  |||| || |||||||| |||||||  ||    
T  45836693 gtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacccc--cactctctctctaatggtgtcattccta 45836790  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    || ||||| |||||| |||||| || |||||| |||||||||||    
T  45836791 atcctatcttgtctactcttaccactcatccagcgcaacatcct 45836834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 14593752 - 14593689
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||||||||||||||||| ||||||  |   |||||||||||| |||||||||||||||||||||    
T  14593752 ctctaatgttgtcatttctaattcggttccgtctagtcttaccacacatccaacgcaacatcct 14593689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 180
Target Start/End: Original strand, 19262637 - 19262785
Alignment:
Q  28 aatctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttg 127  Q
    |||||||| |||||| |||||  ||| || |||| ||||| | | |||| | |||||||||||| ||| |||||||| |||| ||    ||||||| |||    
T  19262637 aatctacaggtcttctctctacatgctcaaaccacctaagccaagtttctaccatcttttctacaataggtgctaccccaactct----ctctaatattg 19262732  T
Q  128 tcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||| ||| ||||||||||||||| |||| ||| |||  ||| ||||||||    
T  19262733 tcatttctaactctatcatgtctagtattaccacatatcacacgtaacatcct 19262785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 29653845 - 29653904
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaaca 176  Q
    |||||||| |||||||| ||||||||||  ||||||| |||| |||||||||||||||||    
T  29653845 ctctaatgatgtcatttctaattctatcccgtctagtgttaccacacatccaacgcaaca 29653904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 36651985 - 36651922
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||| |||||||  |||| ||||| ||||||||||||| || ||||||||||||||||||    
T  36651985 ctctaatggtgtcattcctaatcctatcctgtctagtcttaccactcatccaacgcaacatcct 36651922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 180
Target Start/End: Complemental strand, 5335988 - 5335850
Alignment:
Q  38 tcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataa 137  Q
    ||||| |||||  |||||| |||| ||||||| | |||| | ||||||| |||| |||  ||||||| |||| ||    |||||||||| |||||| |||    
T  5335988 tcttctctctatatgcccaaaccacctaagtctagtttcgaccatctttcctactatagatgctaccccaactct----ctctaatgttatcatttctaa 5335893  T
Q  138 ttctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||  ||  ||||||||||||| |||||| ||||||||||||||    
T  5335892 ttgcattctgtctagtcttaccacacattcaacgcaacatcct 5335850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 38606993 - 38606936
Alignment:
Q  120 taatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacat 177  Q
    |||||||||||||  |||| ||||||||||||||||||| || |||||| ||||||||    
T  38606993 taatgttgtcattcctaatcctatcatgtctagtcttaccactcatccagcgcaacat 38606936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 40008708 - 40008769
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatc 178  Q
    ||||||||||||||||| ||||||| |  |||||||| |||| |||||||| ||||||||||    
T  40008708 ctctaatgttgtcatttctaattcttttttgtctagttttaccacacatcctacgcaacatc 40008769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 40169732 - 40169651
Alignment:
Q  23 cacataatctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacc 104  Q
    |||| ||||||| ||||||  |||||  |||||| |||| ||||| | |||||||| |||||||||||| ||||||||||||    
T  40169732 cacaaaatctacgtgtcttatctctacatgcccaaaccacctaagcctattttccaccatcttttctactataagtgctacc 40169651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 11594029 - 11593888
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| |||||||||    |||||| | || ||||||||| ||| |||||||| |  |||| || ||| |||| |||||||  ||    
T  11594029 gtcttctctctacatgcccaaaccatctaaccgtattttctaccaacttttctactataggtgctacccc--cactctctctcaaatggtgtcattccta 11593932  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||  |||| ||||||||||||| || ||||||||||||||||||    
T  11593931 atcttatcctgtctagtcttaccactcatccaacgcaacatcct 11593888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 24434656 - 24434716
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacat 177  Q
    ||||||||||  ||||||||||| ||||||||||||| |||| || ||| |||||||||||    
T  24434656 ctctaatgttaccatttataattttatcatgtctagtattaccacgcattcaacgcaacat 24434716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 16013275 - 16013212
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||||||||||||||||| |||||   |   |||||||||||| |||||||||||||||||||||    
T  16013275 ctctaatgttgtcatttctaatttggttccgtctagtcttaccacacatccaacgcaacatcct 16013212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 24549978 - 24550041
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||||| |||||| ||||  |||  | ||||||||||||||||||||||| |||||||||    
T  24549978 ctctaatgttatcatttctaatcatattctatctagtcttacaacacatccaacacaacatcct 24550041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 180
Target Start/End: Original strand, 48736155 - 48736253
Alignment:
Q  80 catcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcc 179  Q
    ||||||||||||  || |||||||| |||| || ||  | |||||| ||||||| ||||| ||||   ||||||||||| |||||| |||||||||||||    
T  48736155 catcttttctactgtaggtgctaccccaactctctc--tataatgtcgtcatttctaattttatctcatctagtcttaccacacattcaacgcaacatcc 48736252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 32630568 - 32630483
Alignment:
Q  135 taattctatcatgtctagtcttacaacacatccaacgcaacatcctaatgtgcgctcc----actttattctcgtgttggttctta 216  Q
    |||| ||||||||||||||||||| || |||||| | ||||||||| || | |||| |    |||||| |||||||||||||||||    
T  32630568 taatcctatcatgtctagtcttaccactcatccagctcaacatcctcatctccgctacacttactttactctcgtgttggttctta 32630483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 43240573 - 43240735
Alignment:
Q  18 cttaccacataatctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgc 117  Q
    |||||||||  ||||||  |||||| |||||  ||| || || ||||||| | |||||| ||||  |||||||| ||| |||||||| | || || || |    
T  43240573 cttaccacaacatctacgggtcttctctctacatgctcaaactatctaagcctattttctatcaatttttctactataggtgctacccccactctctctc 43240672  T
Q  118 tctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||  |||||| ||||| ||||||||||||||||||| || ||||||||||||||||||    
T  43240673 tctaatggcgtcattcataatcctatcatgtctagtcttaccactcatccaacgcaacatcct 43240735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 1210814 - 1210673
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| |||||||||| | |||||| | || ||||||||| ||| |||||||| |  |||| || |||||||| |||||||  ||    
T  1210814 gtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccc--cactctctctctaatggtgtcattccta 1210717  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    || ||||| ||||||||||||| || ||||||||||||||||||    
T  1210716 atcctatcctgtctagtcttaccactcatccaacgcaacatcct 1210673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 43423808 - 43423645
Alignment:
Q  17 acttaccacataatctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcg 116  Q
    |||||| |||||||||||| |||||| |||||  || ||| |||| ||||| | | |||||| |||||||||||| ||| ||| |||| ||  ||| ||     
T  43423808 acttactacataatctacaagtcttctctctacatggccaaaccacctaagcctagtttccaccatcttttctactataggtgttacccca--actctct 43423711  T
Q  117 ctctaatgttgtcatttataattctatcatgtctagtctt--acaacacatccaacgcaacatcct 180  Q
    ||||||||| ||||||| |||| ||||| |||||||||||   | |||||||||||||||||||||    
T  43423710 ctctaatgtggtcatttctaatcctatcctgtctagtcttcccccacacatccaacgcaacatcct 43423645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 180
Target Start/End: Complemental strand, 8671986 - 8671848
Alignment:
Q  38 tcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataa 137  Q
    ||||| |||||  |||||| |||||||||| | |||||| | || ||||||||| ||| |||||||| | || ||    |||||||| |||||||  |||    
T  8671986 tcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactct----ctctaatggtgtcattcctaa 8671891  T
Q  138 ttctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    | ||||||||||||||||||| || ||||||||||||||||||    
T  8671890 tcctatcatgtctagtcttaccactcatccaacgcaacatcct 8671848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 180
Target Start/End: Complemental strand, 22090151 - 22090022
Alignment:
Q  51 tgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtct 150  Q
    |||||| |||||||||| | |||||| | || ||||||||| ||| |||||||| | || || || |||||||| ||||||| ||||| ||||| |||||    
T  22090151 tgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctctaatggtgtcattcataatcctatcctgtct 22090052  T
Q  151 agtcttacaacacatccaacgcaacatcct 180  Q
    |||||||| || |||||||| || ||||||    
T  22090051 agtcttaccactcatccaacacagcatcct 22090022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 9592803 - 9592662
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  ||||||  ||||||||| | |||||| |  | ||||||||| ||| |||||||| |  |||| || |||||||| |||||||  ||    
T  9592803 gtcttctctctacatgcccaacccatctaagcctattttctacaaacttttctactataggtgctacccc--cactctctctctaatggtgtcattccta 9592706  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    || ||||||||||||||||||| || ||||||||||||||||||    
T  9592705 atcctatcatgtctagtcttaccactcatccaacgcaacatcct 9592662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 30202343 - 30202484
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  || ||| |||||||||| | |||||| | || | ||||||| ||| |||||||| |  |||| || |||||||| |||||||  ||    
T  30202343 gtcttctctctacatgaccaaaccatctaagcctattttctaccaacctttctactataggtgctacccc--cactctctctctaatggtgtcattccta 30202440  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    || ||||||||||||||||||| || ||||||||||||||||||    
T  30202441 atcctatcatgtctagtcttaccactcatccaacgcaacatcct 30202484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 180
Target Start/End: Original strand, 14226056 - 14226181
Alignment:
Q  51 tgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtct 150  Q
    |||||| |||| ||||| | |||||||| ||||||||||| |||| |||||||  |||| ||    ||| ||||||| ||||| |||| |||||||||||    
T  14226056 tgcccaaaccacctaagcctattttccaccatcttttctatgataggtgctactgcaactct----ctccaatgttgccatttctaatcctatcatgtct 14226151  T
Q  151 agtcttacaacacatccaacgcaacatcct 180  Q
    || ||||| ||||||||||| ||| |||||    
T  14226152 agccttaccacacatccaacacaaaatcct 14226181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 178
Target Start/End: Original strand, 18793227 - 18793340
Alignment:
Q  63 ctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtcttacaaca 162  Q
    ||||||| | |||| | |||||||||||| |||||| ||||| |||| || ||  | |||||| ||||||| || ||||||| ||||||||||| | |||    
T  18793227 ctaagtctagtttctaccatcttttctacaataagtcctaccccaaccctctc--tttaatgtcgtcatttttagttctatcctgtctagtctttccaca 18793324  T
Q  163 catccaacgcaacatc 178  Q
    ||||||||||||||||    
T  18793325 catccaacgcaacatc 18793340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 180
Target Start/End: Original strand, 32231159 - 32231308
Alignment:
Q  29 atctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgt 128  Q
    ||||||| |||||| |||||  |||||| |||||||||| | |||||| | ||  |||||||| ||| |||||||| |  |||| || |||||||| |||    
T  32231159 atctacaagtcttctctctacatgcccaaaccatctaagcctattttctaccaatttttctactataggtgctacccc--cactctctctctaatggtgt 32231256  T
Q  129 catttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||||  |||| |||||||||||| |||||| || |||| | |||||||||||    
T  32231257 cattcctaatcctatcatgtctaatcttaccactcatctagcgcaacatcct 32231308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 34792562 - 34792703
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| |||||||||| | | |||| | || ||||||||| ||| |||||||| |  |||| || |||||||| | |||||  ||    
T  34792562 gtcttctctctacatgcccaaaccatctaagcctactttctaccaacttttctactataggtgctacccc--cactctctctctaatggtttcattccta 34792659  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    || ||||||||||||||||||| || |||||| |||||||||||    
T  34792660 atcctatcatgtctagtcttaccactcatccagcgcaacatcct 34792703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 51440978 - 51441119
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| |||||||||| | |||||| | || ||||||||| ||| ||| |||| |  |||| || |||||||| |||||||  ||    
T  51440978 gtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgttacccc--cactctctctctaatggtgtcattccta 51441075  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    || ||||||||||||||||||| || | ||||| ||||||||||    
T  51441076 atcctatcatgtctagtcttaccactcgtccaatgcaacatcct 51441119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 180
Target Start/End: Complemental strand, 696316 - 696197
Alignment:
Q  59 ccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtcttac 158  Q
    ||||||||| | |||||| | || ||||||||| ||| |||||||| |  |||| || |||||||| |||||||  |||| ||||| |||||||||||||    
T  696316 ccatctaagcctattttctaccaacttttctactataggtgctacccc--cactctctctctaatggtgtcattcctaatcctatcctgtctagtcttac 696219  T
Q  159 aacacatccaacgcaacatcct 180  Q
     || |||||| |||||||||||    
T  696218 cactcatccagcgcaacatcct 696197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 26016415 - 26016365
Alignment:
Q  130 atttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||||| |||| ||||||||||||| |||||||||||||||||||||    
T  26016415 atttataattatatcctgtctagtcttaccacacatccaacgcaacatcct 26016365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 180
Target Start/End: Complemental strand, 40419721 - 40419567
Alignment:
Q  24 acataatctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaat 123  Q
    |||||||| |||||||||| |||||  |||||| ||||  |||||| | || | | ||||| |||||| |||||| ||||| |||| || ||  ||||||    
T  40419721 acataatccacatgtcttctctctacatgcccaaaccacttaagtctagttactaccatctattctactataagttctaccccaactctctc--tctaat 40419624  T
Q  124 gttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||||| ||||||||||   |||||| |||| | |||| ||||||| ||||||    
T  40419623 gttgtcatttctaattctatctcatctagttttaccatacattcaacgcaccatcct 40419567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 19908662 - 19908718
Alignment:
Q  118 tctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaa 174  Q
    |||||||||||||||   |||  ||||||||||||||||||||||||||||||||||    
T  19908662 tctaatgttgtcattacaaatcatatcatgtctagtcttacaacacatccaacgcaa 19908718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 4379996 - 4379933
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||||||||||||||||| ||||  |||| | ||||||||||| ||||||||||| |||||||||    
T  4379996 ctctaatgttgtcatttctaatcatatcttttctagtcttaccacacatccaacacaacatcct 4379933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 180
Target Start/End: Original strand, 32082979 - 32083099
Alignment:
Q  58 accatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtctta 157  Q
    |||||||||| | |||||| | || ||||||||| ||| |||||||| |  |||| || |||||||| |||||||  |||| ||| | ||||||||||||    
T  32082979 accatctaagcctattttctaccaacttttctactataggtgctacccc--cactctctctctaatggtgtcattcctaatcctaccctgtctagtctta 32083076  T
Q  158 caacacatccaacgcaacatcct 180  Q
    | || |||||| |||||||||||    
T  32083077 ccactcatccagcgcaacatcct 32083099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 19969652 - 19969694
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttaca 159  Q
    ||||||||||||||||| ||||||||||| |||||||||||||    
T  19969652 ctctaatgttgtcatttctaattctatcacgtctagtcttaca 19969694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 51602125 - 51601986
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| |||||||||| | |||||| | || ||||||||| ||| ||||||||   || ||    |||||||| |||||||  ||    
T  51602125 gtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctaccctcactct----ctctaatggtgtcattccta 51602030  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||  |||||||||||||||||| || |||| |||||||||||||    
T  51602029 atcatatcatgtctagtcttaccactcatctaacgcaacatcct 51601986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 180
Target Start/End: Complemental strand, 9509344 - 9509246
Alignment:
Q  80 catcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcc 179  Q
    |||||||||||| ||| |||||||| |||| || ||  ||||||| |||||||| ||||  |||| ||||||||||||  || |||||||| ||||||||    
T  9509344 catcttttctactataggtgctaccccaactctctc--tctaatggtgtcatttctaatcatatcctgtctagtcttatcactcatccaacacaacatcc 9509247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 37463131 - 37463261
Alignment:
Q  82 tcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatccta 181  Q
    |||||||||| ||| |||||||| |||| ||    |||||||| |||||||  |||| ||| | ||||||||||||| || ||||||| | ||||||||     
T  37463131 tcttttctactataggtgctaccccaactct----ctctaatggtgtcattcctaatcctaacctgtctagtcttaccactcatccaatgaaacatcctc 37463226  T
Q  182 atgtgcgctccactttattctcgtgttggttctta 216  Q
    || | | || ||||| ||||| |||||||||||||    
T  37463227 atctcctctacacttgattcttgtgttggttctta 37463261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 15086003 - 15085862
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  || ||| |||||||||| | |||||| | || ||||||||| ||| |||||||| |  |||| || |||||||| |||||||  ||    
T  15086003 gtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacccc--cactctctctctaatggtgtcattccta 15085906  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    || ||||| | ||||||||||| || | |||| |||||||||||    
T  15085905 atcctatcctatctagtcttaccactcgtccagcgcaacatcct 15085862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 52442799 - 52442863
Alignment:
Q  121 aatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcctaatgt 185  Q
    |||||| |||||| ||||  |||| ||||||||||||| ||||||||||| ||||||||| ||||    
T  52442799 aatgttctcatttctaatcttatcttgtctagtcttaccacacatccaacacaacatcctcatgt 52442863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 180
Target Start/End: Original strand, 4001689 - 4001809
Alignment:
Q  58 accatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtctta 157  Q
    |||||||||| | |||||| | || ||||||||| ||| |||||||| |  |||| || |||||||| |||||||  |||| ||||  ||||||||||||    
T  4001689 accatctaagcctattttctaccaacttttctactataggtgctacccc--cactctctctctaatggtgtcattcctaatcctattttgtctagtctta 4001786  T
Q  158 caacacatccaacgcaacatcct 180  Q
    | || |||| | |||||||||||    
T  4001787 ccactcatctagcgcaacatcct 4001809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 4590815 - 4590878
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||||||| ||||||||| |||| ||||| |||||||||| ||  ||||| ||||||||||||||    
T  4590815 ctctaatattgtcatttctaatcctatcttgtctagtctcaccgcacattcaacgcaacatcct 4590878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 180
Target Start/End: Original strand, 49347688 - 49347747
Alignment:
Q  121 aatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||| |||||||  |||| ||||| ||||||||||||| || ||||||||||||||||||    
T  49347688 aatggtgtcattcctaatcctatcctgtctagtcttaccactcatccaacgcaacatcct 49347747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 17275174 - 17275137
Alignment:
Q  140 ctatcatgtctagtcttacaacacatccaacgcaacat 177  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  17275174 ctatcatgtgtagtcttaccacacatccaacgcaacat 17275137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 48431601 - 48431686
Alignment:
Q  19 ttaccacataatctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacc 104  Q
    |||| ||| |||||||| |||||| |||||  |||||| |||| ||||| | |||||||| |||||||||||| ||| | ||||||    
T  48431601 ttactacaaaatctacaagtcttctctctacatgcccaaaccacctaagcctattttccaccatcttttctactataggggctacc 48431686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 854087 - 854119
Alignment:
Q  126 tgtcatttataattctatcatgtctagtcttac 158  Q
    |||||||| ||||||||||||||||||||||||    
T  854087 tgtcatttttaattctatcatgtctagtcttac 854119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 51234606 - 51234542
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatg-tctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||||||| |||| |||| |||||||| | ||||||||| |||| |||||| |||||||||    
T  51234606 ctctaatgttgtaatttctaatcctatcatgttttagtcttaccacacgtccaacacaacatcct 51234542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 183
Target Start/End: Complemental strand, 31537 - 31393
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| |||||||||| | |||||| | || ||||||||| ||| |||||||| |  |||| || |||||||| |||||||  ||    
T  31537 gtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccc--cactctctctctaatggtgtcattccta 31440  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcctaat 183  Q
    ||  |||| ||||||||||||| || |||||||||||||||||||||    
T  31439 atcttatcctgtctagtcttaccactcatccaacgcaacatcctaat 31393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 36545218 - 36545075
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| |||||||||| | |||||| | || ||||||||| ||| ||| |||| | || || || |||||||| |||||||  ||    
T  36545218 gtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgttacccccactctctctctctaatggtgtcattccta 36545119  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    || ||||||||||||||||||| || |||||||| |||||||||    
T  36545118 atcctatcatgtctagtcttaccactcatccaacacaacatcct 36545075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 29 - 183
Target Start/End: Complemental strand, 40813401 - 40813247
Alignment:
Q  29 atctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgt 128  Q
    |||||||  ||||| |||||  |||||| |||||||||  | |||||| | || ||||||||| ||| |||||||| | || || || |||||||| |||    
T  40813401 atctacagatcttctctctacatgcccaaaccatctaaacctattttctaccaacttttctactataggtgctacccccactctctctctctaatggtgt 40813302  T
Q  129 catttataattctatcatgtctagtcttacaacacatccaacgcaacatcctaat 183  Q
    ||||  |||| |||| |||||||||||||| || |||||||| ||||||||||||    
T  40813301 cattcttaatcctattatgtctagtcttaccactcatccaacacaacatcctaat 40813247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 180
Target Start/End: Original strand, 36395154 - 36395304
Alignment:
Q  29 atctacatgtcttccctctagttgcccacaccatctaagtcc-attttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttg 127  Q
    ||||||| |||||| |||||  |||||| |||||||||  || |||||| | || ||||||||| ||| |||||||| |  |||| || |||||||| ||    
T  36395154 atctacaggtcttctctctacatgcccaaaccatctaaagcctattttctaccaacttttctactataggtgctacccc--cactctctctctaatggtg 36395251  T
Q  128 tcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||  |||| ||||| ||||||||||||| || ||||||||||||||||||    
T  36395252 tcattcctaatcctatcctgtctagtcttaccactcatccaacgcaacatcct 36395304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 180
Target Start/End: Complemental strand, 39946934 - 39946785
Alignment:
Q  29 atctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgt 128  Q
    ||||||| ||||||  ||||  || ||| |||||||||| | |||||| | || ||||||||| ||| |||||||| | || || ||  | ||||| |||    
T  39946934 atctacaggtcttctttctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctttc--tataatggtgt 39946837  T
Q  129 catttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||| ||||| ||||||||||||||||||| || ||||||||||||||||||    
T  39946836 cattcataatcctatcatgtctagtcttaccactcatccaacgcaacatcct 39946785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 12492133 - 12492196
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||| ||||||| ||||| ||||||||||||||||||| || ||||||||||||||||||    
T  12492133 ctctaatggtgtcattcataatcctatcatgtctagtcttaccactcatccaacgcaacatcct 12492196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 32043581 - 32043522
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaaca 176  Q
    ||||||||||||||||| ||||||||||  |||||||||||| |||||||||||||||||    
T  32043581 ctctaatgttgtcatttctaattctatcccgtctagtcttaccacacatccaacgcaaca 32043522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 180
Target Start/End: Original strand, 36565468 - 36565595
Alignment:
Q  51 tgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtct 150  Q
    |||||| |||||||||| | |||||| | || ||||||||| ||| |||||||| |  |||| || |||||||| |||||||  |||| ||||| |||||    
T  36565468 tgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccc--cactctctctctaatggtgtcattcctaatcctatcctgtct 36565565  T
Q  151 agtcttacaacacatccaacgcaacatcct 180  Q
    |||||||| || ||||||||||| ||||||    
T  36565566 agtcttaccactcatccaacgcatcatcct 36565595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 174
Target Start/End: Original strand, 44681286 - 44681387
Alignment:
Q  71 attttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaac 170  Q
    |||||||| |||||||||||  ||| |||||||| ||||  |||| ||||||||||||||||| ||||  ||||  |||||||||||| ||||||||||     
T  44681286 attttccaccatcttttctattataggtgctaccacaac--tgtctctctaatgttgtcatttctaatcttatctcgtctagtcttaccacacatccaat 44681383  T
Q  171 gcaa 174  Q
    ||||    
T  44681384 gcaa 44681387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 13171896 - 13172000
Alignment:
Q  71 attttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaac 170  Q
    |||||||| |||||||||||| ||| ||||| || |||| || ||  |||||| ||||||||| |||| |||||  |||||||||||| ||||||||||     
T  13171896 attttccaccatcttttctactataggtgcttccccaactctctc--tctaatcttgtcatttctaatcctatcccgtctagtcttactacacatccaat 13171993  T
Q  171 gcaacat 177  Q
    |||||||    
T  13171994 gcaacat 13172000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 156
Target Start/End: Complemental strand, 9695709 - 9695583
Alignment:
Q  28 aatctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttg 127  Q
    |||||||| | |||| |||||  |||||| |||| ||||| | | |||||| |||||||||||| ||| |||||||| |||   | || || ||||||||    
T  9695709 aatctacaggacttctctctacatgcccaaaccacctaagccgagtttccaccatcttttctactataggtgctaccccaaa--tatctctataatgttg 9695612  T
Q  128 tcatttataattctatcatgtctagtctt 156  Q
    |||||| |||||||||| |||||||||||    
T  9695611 tcatttctaattctatcctgtctagtctt 9695583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 30748447 - 30748387
Alignment:
Q  120 taatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||||||||| |||| |||||||||||| ||| || |||||||||||| ||||||||    
T  30748447 taatgttgtcatttctaatcctatcatgtctaatctaaccacacatccaacgaaacatcct 30748387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 7046366 - 7046285
Alignment:
Q  74 ttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtctta 157  Q
    ||||| |||||||||||||||  |||||||| || | || || ||||||||||||||||| |||| ||||||||||||||||||    
T  7046366 ttccaccatcttttctacgattggtgctacc-cagc-ctctctctctaatgttgtcatttctaatcctatcatgtctagtctta 7046285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 39051125 - 39051070
Alignment:
Q  125 ttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||||||||| |||||||||||||||| ||||||| ||||||| ||| |||||||||    
T  39051125 ttgtcatttctaattctatcatgtcttgtcttaccacacatctaacacaacatcct 39051070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 180
Target Start/End: Original strand, 39760682 - 39760778
Alignment:
Q  82 tcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||||||||| |||||| | |||| |||||  ||||||||| |||||| || | ||||| |||||| || ||| ||||||||||| |||||||||    
T  39760682 tcttttctacgataggtgctaacccaactctgtc--tctaatgttatcatttctactcctatcttgtctaatcctaccacacatccaacacaacatcct 39760778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 167
Target Start/End: Complemental strand, 25985545 - 25985462
Alignment:
Q  80 catcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtcttacaacacatcc 167  Q
    |||||||||||| ||| |||||||| |||| ||    ||||||||||||| ||| |||||||||| ||||| ||||||| ||||||||    
T  25985545 catcttttctactataggtgctaccccaactct----ctctaatgttgtcgtttctaattctatcctgtcttgtcttaccacacatcc 25985462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 177
Target Start/End: Original strand, 45512722 - 45512847
Alignment:
Q  51 tgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtct 150  Q
    |||||| ||||||||||   ||||||||||||||||||||| ||| |||||||| |||| |  || || |||| || |||||| |||  ||| | | |||    
T  45512722 tgcccaaaccatctaagcttattttccatcatcttttctactataggtgctaccccaactccctctctttaatattttcatttctaacccta-cctatct 45512820  T
Q  151 agtcttacaacacatccaacgcaacat 177  Q
    |||||||| |||||||||||| |||||    
T  45512821 agtcttaccacacatccaacgaaacat 45512847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 180
Target Start/End: Complemental strand, 2796612 - 2796483
Alignment:
Q  51 tgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtct 150  Q
    |||||| |||||||||| | |||||| | || ||||||||| ||| | |||||| |  |||| || |||||||| |||||||  |||| |||||||||||    
T  2796612 tgcccaaaccatctaagcctattttctaccaacttttctactataggcgctacccc--cactctctctctaatggtgtcattcctaatcctatcatgtct 2796515  T
Q  151 a--gtcttacaacacatccaacgcaacatcct 180  Q
    |  ||||||| || |||||| |||||||||||    
T  2796514 atagtcttaccactcatccagcgcaacatcct 2796483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 16351381 - 16351320
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatc 178  Q
    ||||||||||||||||| ||| |||||   |||||||||||| ||| |||||||||||||||    
T  16351381 ctctaatgttgtcatttctaactctattccgtctagtcttaccacatatccaacgcaacatc 16351320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 16252926 - 16252863
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||||||||||||||||| ||||| ||||   |||| |||||| ||||||||||| |||||||||    
T  16252926 ctctaatgttgtcatttctaattttatctcatctaatcttaccacacatccaacacaacatcct 16252863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 29520651 - 29520588
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||| | |||||| |||| |||||   ||||||||||| |||||||||||||||||||||    
T  29520651 ctctaatggtatcatttctaatcctatcccatctagtcttaccacacatccaacgcaacatcct 29520588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 30783331 - 30783394
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||||||||||||||||| |||| ||||| | ||||||||| | ||| ||||||||||| |||||    
T  30783331 ctctaatgttgtcatttctaatcctatcctatctagtcttgccacagatccaacgcaagatcct 30783394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 36069634 - 36069571
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||||||||||||| ||| ||||  ||||  |||||||||||| ||||||||||| |||||||||    
T  36069634 ctctaatgttgtcgtttctaatcttatcccgtctagtcttaccacacatccaacacaacatcct 36069571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 178
Target Start/End: Original strand, 10080155 - 10080257
Alignment:
Q  73 tttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgc 172  Q
    |||||| ||||||||||||  ||  |||||||||||| || ||  |||||||||||||||| ||||  ||||  |||||||||||| | ||| |||||||    
T  10080155 tttccaccatcttttctact-tagatgctacctcaactctctc--tctaatgttgtcatttctaatcttatctcgtctagtcttaccaaacacccaacgc 10080251  T
Q  173 aacatc 178  Q
    ||||||    
T  10080252 aacatc 10080257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 7103253 - 7103200
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaac 170  Q
    |||||||||||||||||||||| |||||   |||||| ||||| ||||||||||    
T  7103253 ctctaatgttgtcatttataatcctatctcatctagttttacagcacatccaac 7103200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 16705753 - 16705700
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaac 170  Q
    ||||||||||||||||| ||||||||||   ||||||||||| ||||| |||||    
T  16705753 ctctaatgttgtcatttctaattctatcccatctagtcttaccacacaaccaac 16705700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 43732540 - 43732495
Alignment:
Q  135 taattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||||||  ||||||||||| |||||||||||| ||||||||    
T  43732540 taattctatcacatctagtcttaccacacatccaacgtaacatcct 43732495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 44175240 - 44175187
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaac 170  Q
    |||||||||||||||||  ||| ||||||||||| ||||| | |||||||||||    
T  44175240 ctctaatgttgtcatttccaatcctatcatgtctggtcttgccacacatccaac 44175187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 39953555 - 39953615
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacat 177  Q
    |||||||||  | |||| ||||| |||||||| || |||||| ||||||||||||||||||    
T  39953555 ctctaatgtcattatttctaattatatcatgtttaatcttaccacacatccaacgcaacat 39953615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 178
Target Start/End: Complemental strand, 32516604 - 32516488
Alignment:
Q  58 accatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtctta 157  Q
    |||| ||||| | |||||||| |||||||||||| ||||||| |||  |||| ||    ||||||||||||||||| ||| |||||| ||||||||||||    
T  32516604 accacctaagcctattttccaccatcttttctactataagtgttactccaactct----ctctaatgttgtcatttctaagtctatcctgtctagtctta 32516509  T
Q  158 caacacatccaacgcaacatc 178  Q
    | ||||||||||| |||||||    
T  32516508 ccacacatccaacacaacatc 32516488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 5305607 - 5305545
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcc 179  Q
    |||||||||||| |||| |||||||||| ||||||||||||| ||||||||||||||||||||    
T  5305607 ctctaatgttgttatttctaattctatcttgtctagtcttaccacacatccaacgcaacatcc 5305545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 51 - 180
Target Start/End: Complemental strand, 24178565 - 24178438
Alignment:
Q  51 tgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtct 150  Q
    |||||| |||||||||| | |||||| | || ||||||||| ||| |||||||| |  |||| || |||||||| |||||||  |||| ||||||||| |    
T  24178565 tgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccc--cactctctctctaatggtgtcattcttaatcctatcatgtat 24178468  T
Q  151 agtcttacaacacatccaacgcaacatcct 180  Q
    |||||||| || ||||||||||||||||||    
T  24178467 agtcttaccactcatccaacgcaacatcct 24178438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 180
Target Start/End: Complemental strand, 1275332 - 1275193
Alignment:
Q  38 tcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataa 137  Q
    ||||| |||||  |||||| |||||||||| | |||||| | || ||||||||| ||| |||||||| ||   || || |||||||| |||||||  |||    
T  1275332 tcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccca---ctctctctctaatggtgtcattcctaa 1275236  T
Q  138 ttctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    | ||| ||||||||||||||| || ||||||||||||||||||    
T  1275235 tcctaccatgtctagtcttaccactcatccaacgcaacatcct 1275193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 2075687 - 2075828
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| |||||||||| | ||| || | || |||||||||  || ||| |||| |  |||| || ||||||||||||||||  ||    
T  2075687 gtcttctctctacatgcccaaaccatctaagcctattgtctaccaacttttctactgtaggtgttacccc--cactctctctctaatgttgtcattccta 2075784  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    || ||||| |||||||||||||||| ||||||||||||||||||    
T  2075785 atcctatcttgtctagtcttacaactcatccaacgcaacatcct 2075828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 9235060 - 9235000
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacat 177  Q
    |||||||||||||||||||||| |||||  |||||||||||| |||||||||| |||||||    
T  9235060 ctctaatgttgtcatttataatcctatcccgtctagtcttaccacacatccaatgcaacat 9235000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 28186959 - 28187019
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacat 177  Q
    ||||||||||||||||| |||| ||| ||||||||||||||| |||||||||| |||||||    
T  28186959 ctctaatgttgtcatttctaatcctaccatgtctagtcttaccacacatccaatgcaacat 28187019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 1287880 - 1287943
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||| |||||||  |||| ||||||||||||||||||| || ||||||||||||||||||    
T  1287880 ctctaatgatgtcattcctaatcctatcatgtctagtcttaccactcatccaacgcaacatcct 1287943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 169
Target Start/End: Original strand, 31636133 - 31636261
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| |||| ||||||| | |||| | |||||||||||| ||| |||||||| ||||  |    |||||||| |||||||||||    
T  31636133 gtcttctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccccaacttt----ctctaatgctgtcatttata 31636228  T
Q  137 attctatcatgtctagtcttacaacacatccaa 169  Q
    ||||||||  |||||||||||| ||| ||||||    
T  31636229 attctatccagtctagtcttaccacaaatccaa 31636261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 216
Target Start/End: Complemental strand, 21093767 - 21093664
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcctaatgtgcgctccac----tttattctcgtgttggtt 212  Q
    ||||||| ||||||||| |||||| ||||  ||||||||||| |||||| |||||||||||||| || | | || |||    ||||||||||||||||||    
T  21093767 ctctaatattgtcatttctaattccatcacatctagtcttaccacacatacaacgcaacatcctcatatccactacacttattttattctcgtgttggtt 21093668  T
Q  213 ctta 216  Q
    ||||    
T  21093667 ctta 21093664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 418243 - 418317
Alignment:
Q  80 catcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtcttac 158  Q
    |||||||||||| ||| |||||||| |||| ||    ||||||||||||||||| |||||||||||||||| |||||||    
T  418243 catcttttctaccataggtgctaccccaactct----ctctaatgttgtcatttctaattctatcatgtctcgtcttac 418317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 215
Target Start/End: Complemental strand, 7678471 - 7678369
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcctaatgtgcgctccactt----tattctcgtgttggtt 212  Q
    ||||||||||||||||| |||| ||||| | ||||||||| | ||| ||||||||||||||||| || | | || |||||    ||||||||||||||||    
T  7678471 ctctaatgttgtcatttctaatcctatcctatctagtcttgccacagatccaacgcaacatcctcatctccactacacttgttctattctcgtgttggtt 7678372  T
Q  213 ctt 215  Q
    |||    
T  7678371 ctt 7678369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 36123489 - 36123550
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatc 178  Q
    ||||||| ||||||||| |||||| ||||||| |||| |||||||||||||||| |||||||    
T  36123489 ctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatc 36123550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 4496453 - 4496310
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| |||||||||| | |||||| | || ||||||||| ||| |||||||| |  |||| || |||||| | |||||||  ||    
T  4496453 gtcttctctctacatgcccaaaccatctaagcctattttctaccagcttttctactataggtgctacccc--cactctctctctaaaggtgtcattccta 4496356  T
Q  137 attctatcatgt--ctagtcttacaacacatccaacgcaacatcct 180  Q
    || ||||| |||  |||||||||| || ||||||||||||||||||    
T  4496355 atcctatcctgtgtctagtcttaccactcatccaacgcaacatcct 4496310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 180
Target Start/End: Original strand, 6368220 - 6368279
Alignment:
Q  121 aatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||||||||||||| ||||||||||  ||||| |||||| ||||||| |||||||||||||    
T  6368220 aatgttgtcatttctaattctatctcgtctattcttaccacacatctaacgcaacatcct 6368279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 11002712 - 11002775
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||||||||||||||||| ||||||||||   ||| ||||||| ||||||||| |||||||||||    
T  11002712 ctctaatgttgtcatttctaattctatcccatctcgtcttaccacacatccagcgcaacatcct 11002775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 42199374 - 42199290
Alignment:
Q  18 cttaccacataatctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacc 104  Q
    ||||| ||| ||||||||||||||| |||||  |||||| |||| ||||||| | |||||| ||||||||||||  |||||||||||    
T  42199374 cttactacagaatctacatgtcttctctctacatgcccaaaccacctaagtctagtttccaccatcttttctac--taagtgctacc 42199290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 14667816 - 14667685
Alignment:
Q  53 cccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaa----cactgtcgctctaatgttgtcatttataattctatcatgt 148  Q
    |||| |||| ||||||| |||||||| |||||||||||| ||| |||||||| |||    | || || ||||||| ||||||||| |||||||| |   |    
T  14667816 cccaaaccacctaagtctattttccaccatcttttctactataggtgctaccccaactctctctctctctctaatattgtcatttctaattctacctcat 14667717  T
Q  149 ctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||||  ||||||||||| |||| ||||    
T  14667716 ctagtcttatcacacatccaacacaacttcct 14667685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 11729071 - 11729022
Alignment:
Q  128 tcatttataattctatcatgtctagtcttacaacacatccaacgcaacat 177  Q
    ||||||||||||||||||||||||||||||  | ||||| ||||||||||    
T  11729071 tcatttataattctatcatgtctagtcttatcatacatctaacgcaacat 11729022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 180
Target Start/End: Complemental strand, 33006708 - 33006590
Alignment:
Q  58 accatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtctta 157  Q
    |||||||||||| | |||  |||||||||||| | ||| | || |||||||| ||    ||||||||||||||||| ||||| ||||  ||||| |||||    
T  33006708 accatctaagtctaatttatatcatcttttcttctatatgagcaacctcaactct----ctctaatgttgtcatttttaattttatctcgtctaatctta 33006613  T
Q  158 caacacatccaacgcaacatcct 180  Q
     ||||||| |||| |||||||||    
T  33006612 gaacacattcaacacaacatcct 33006590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 16347591 - 16347732
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  || ||| |||||||||| | |||||| | || ||||||||| ||| |||||||| |  | || || |||||||| | |||||| ||    
T  16347591 gtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacccc--cgctctctctctaatggtttcattttta 16347688  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||  |||  ||||||||||||| || ||||||||||||||||||    
T  16347689 atcatatattgtctagtcttaccactcatccaacgcaacatcct 16347732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 34194787 - 34194851
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatccta 181  Q
    ||||||||||  ||||| |||| ||||| |||||||| |||| ||||||||||| ||||||||||    
T  34194787 ctctaatgtttacatttctaatcctatcctgtctagttttaccacacatccaacacaacatccta 34194851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 10639288 - 10639225
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||| |||||||  |||| ||||  ||||||||||||| || ||||||||||||||||||    
T  10639288 ctctaatggtgtcattcctaatcctattctgtctagtcttaccactcatccaacgcaacatcct 10639225  T

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Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 180
Target Start/End: Complemental strand, 27998394 - 27998351
Alignment:
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||  ||||||||||||| |||||||||||||||||||||    
T  27998394 attctattttgtctagtcttaccacacatccaacgcaacatcct 27998351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 6889081 - 6888931
Alignment:
Q  18 cttaccacataatctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgc 117  Q
    |||||||||||||| ||| |||||| |||||  || ||| ||||  |||| | |||||||| |||||||||  | ||| |||||||| |||| || |  |    
T  6889081 cttaccacataatccacaagtcttctctctacatgtccaaaccacttaagcctattttccaccatcttttcctctatacgtgctaccccaactcttt--c 6888984  T
Q  118 tctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaac 170  Q
    | |||| ||||||||| ||||  ||||   ||||||||||| |||||||||||    
T  6888983 tgtaatattgtcatttctaatcatatctcatctagtcttaccacacatccaac 6888931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 10083032 - 10083092
Alignment:
Q  119 ctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||| |||||| ||||||||||  |||||||||||| |||||| ||| ||||||||||    
T  10083032 ctaatgttctcatttctaattctatcccgtctagtcttaccacacat-caaagcaacatcct 10083092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 180
Target Start/End: Original strand, 43558135 - 43558168
Alignment:
Q  147 gtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||||||| |||||||||||||||||||||    
T  43558135 gtctagtcttaccacacatccaacgcaacatcct 43558168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 21952339 - 21952279
Alignment:
Q  120 taatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||||| |||||||| ||||  ||||  |||||||||||| |||||| ||||||||||||||    
T  21952339 taatgctgtcatttctaatcttatctcgtctagtcttaccacacatgcaacgcaacatcct 21952279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 33667297 - 33667213
Alignment:
Q  25 cataatctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaac 109  Q
    ||||||| ||| |||||| |||||  |||||| |||| ||||||| | |||| | |||||||||||| ||| |||||||| ||||    
T  33667297 cataatccacaggtcttctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccccaac 33667213  T

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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 3243882 - 3244005
Alignment:
Q  53 cccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctag 152  Q
    |||| |||||||||| | ||||||||||| ||||| ||| ||| |||||||| | || ||    |||||||| ||||||| ||||| ||||||||| |||    
T  3243882 cccaaaccatctaagcctattttccatcaacttttttactataggtgctacccccactct----ctctaatggtgtcattcataatcctatcatgtgtag 3243977  T
Q  153 tcttacaacacatccaacgcaacatcct 180  Q
    |||||| || ||||||||||||||||||    
T  3243978 tcttactactcatccaacgcaacatcct 3244005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 80 - 178
Target Start/End: Original strand, 4598818 - 4598916
Alignment:
Q  80 catcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatc 178  Q
    ||||||| |||| ||| |||||||| |||| || || ||||||||| |||||||  |||||||||  |||||||||||| |||||||||||||||||||    
T  4598818 catctttactactataggtgctaccccaactctctctctctaatgtcgtcattttgaattctatcccgtctagtcttaccacacatccaacgcaacatc 4598916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 58 - 216
Target Start/End: Complemental strand, 38429932 - 38429772
Alignment:
Q  58 accatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtctta 157  Q
    |||||||||| | |||||| | || ||||||||| ||| ||||| || |  |||| || |||||||| |||||||  |||| ||||||||||||||||||    
T  38429932 accatctaagcctattttctaccaacttttctactataggtgctgcccc--cactctctctctaatggtgtcattcctaatcctatcatgtctagtctta 38429835  T
Q  158 caacacatccaacgcaacatcctaatgtgcgctccactt----tattctcgtgttggttctta 216  Q
    | || |||||||||||||||||| || | |||| |||||    || |||||||||||||||||    
T  38429834 ccactcatccaacgcaacatcctcatctccgctacacttactctactctcgtgttggttctta 38429772  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 8180849 - 8180708
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  |||||| ||||||||||   |||||| | || ||||||||| ||| |||||||| |  |||| || |||||||| |||||||  ||    
T  8180849 gtcttctctctacatgcccaaaccatctaagcttattttctaccaacttttctactataggtgctacccc--cactctctctctaatggtgtcattccta 8180752  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    || ||||||||||||||||||| || |||||||| |||||||||    
T  8180751 atcctatcatgtctagtcttaccactcatccaacacaacatcct 8180708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 183
Target Start/End: Complemental strand, 7825438 - 7825283
Alignment:
Q  28 aatctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttg 127  Q
    ||||||||||||||| |||||  ||| || |||| |||||   ||||| || ||| ||| | || ||| |||||||  ||||||| || |||||||  ||    
T  7825438 aatctacatgtcttctctctacatgctcaaaccaactaagcttatttttcaccatatttacaactataggtgctactccaacactctctctctaatagtg 7825339  T
Q  128 tcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcctaat 183  Q
    |||||| ||||  ||||  |||||||||||| ||||||||||||||||||||||||    
T  7825338 tcatttctaatcatatccagtctagtcttaccacacatccaacgcaacatcctaat 7825283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 9556563 - 9556722
Alignment:
Q  18 cttaccacataatctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgc 117  Q
    ||||| ||| ||||||| ||||||| |||||  |||| | |||| ||||| | |||||||| ||| |||||||| ||||||| |||| ||||  | || |    
T  9556563 cttactacagaatctacttgtcttctctctacatgcctaaaccacctaagcctattttccaccat-ttttctactataagtgttaccccaac--tttctc 9556659  T
Q  118 tctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||||||||||| ||||  ||||  ||||| |||||| ||||||||||| |||||||||    
T  9556660 tctaatgttgtcatttctaatcatatcccgtctaatcttaccacacatccaacacaacatcct 9556722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 178
Target Start/End: Original strand, 9578911 - 9579053
Alignment:
Q  32 tacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcat 131  Q
    |||| |||||| |||||  || ||| |||| ||||||| ||||| |||||||||| |||| ||| |||  ||| |||| ||    ||||||  |||||||    
T  9578911 tacaggtcttctctctacatgtccaaaccacctaagtctattttacatcatctttactactatatgtgtcaccccaactct----ctctaacattgtcat 9579006  T
Q  132 ttataattctatcatgtctagtcttacaacacatccaacgcaacatc 178  Q
    || |||||||||||| |||| |||||| |||||||||||||||||||    
T  9579007 ttttaattctatcatatctattcttaccacacatccaacgcaacatc 9579053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 185
Target Start/End: Original strand, 38452898 - 38453048
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctct--aatgttgtcattta 134  Q
    |||||| |||||  |||||| |||||||||| | |||||| | || ||||||||| |||  ||||||| | || || || ||||  |||| |||||||      
T  38452898 gtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactatagatgctacccccactctctctctctctaatggtgtcattcc 38452997  T
Q  135 taattctatcatgtctagtcttacaacacatccaacgcaacatcctaatgt 185  Q
    |||| |||| |||||||||||||| || |||||||||||||||||| ||||    
T  38452998 taatcctatgatgtctagtcttaccactcatccaacgcaacatcctcatgt 38453048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 178
Target Start/End: Complemental strand, 3866141 - 3866002
Alignment:
Q  37 gtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttata 136  Q
    |||||| |||||  ||| || |||||||||| | |||||| | || ||||| ||| ||| |||||||| |  |||| || ||| |||| |||||||  ||    
T  3866141 gtcttctctctacatgcacaaaccatctaagcctattttctaccaacttttttactataggtgctacccc--cactctctctccaatggtgtcattccta 3866044  T
Q  137 attctatcatgtctagtcttacaacacatccaacgcaacatc 178  Q
    || ||||||||||||||||||| || ||||||||||||||||    
T  3866043 atcctatcatgtctagtcttaccactcatccaacgcaacatc 3866002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 180
Target Start/End: Original strand, 19337097 - 19337203
Alignment:
Q  71 attttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtcta-gtcttacaacacatccaa 169  Q
    |||||||| ||||||| |||| ||| |||||||| |||| ||    |||||||||| ||||||||||| ||||| || ||| ||||||| ||||||||||    
T  19337097 attttccaccatctttactactataggtgctaccccaactct----ctctaatgttctcatttataatcctatcctgcctaagtcttaccacacatccaa 19337192  T
Q  170 cgcaacatcct 180  Q
    || ||||||||    
T  19337193 cgtaacatcct 19337203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 166
Target Start/End: Complemental strand, 40759133 - 40759041
Alignment:
Q  73 tttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtcttacaacacatc 166  Q
    |||||| ||| |||||||| |||||||||| | |||| || || ||||||||||||||||| ||||  |||| |||||||||||||| ||||||    
T  40759133 tttccaccattttttctactataagtgctaacccaac-ctctctctctaatgttgtcatttctaatcttatcttgtctagtcttacaccacatc 40759041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 23714455 - 23714615
Alignment:
Q  18 cttaccacataatctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgc 117  Q
    ||||| |||||||| ||| |||||| |||||  |||| | || |  |||||| | |||||| |||||||||||| ||| |||||||| |||| || ||      
T  23714455 cttactacataatccacaagtcttctctctacatgcctaaactacataagtctagtttccaccatcttttctactatatgtgctacc-caactctatc-- 23714551  T
Q  118 tctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcctaat 183  Q
      |||||| ||||||| |||| ||||  ||||||||||||| ||||||||||| |||||| |||||    
T  23714552 --taatgtcgtcatttttaatcctattttgtctagtcttaccacacatccaacacaacattctaat 23714615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 24102127 - 24102287
Alignment:
Q  18 cttaccacataatctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgc 117  Q
    ||||| |||||||| ||| |||||| |||||  |||| | || |  |||||| | |||||| |||||||||||| ||| |||||||| |||| || ||      
T  24102127 cttactacataatccacaagtcttctctctacatgcctaaactacataagtctagtttccaccatcttttctactatatgtgctacc-caactctatc-- 24102223  T
Q  118 tctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcctaat 183  Q
      |||||| ||||||| |||| ||||  ||||||||||||| ||||||||||| |||||| |||||    
T  24102224 --taatgtcgtcatttttaatcctattttgtctagtcttaccacacatccaacacaacattctaat 24102287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 4807583 - 4807520
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||| ||||||| ||||| |||||||||||| |||||| |  ||||||||||||||||||    
T  4807583 ctctaatgatgtcattcataatcctatcatgtctattcttaccattcatccaacgcaacatcct 4807520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 36183442 - 36183379
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||  |||||||  |||| ||||||||||||||||||| || ||||||||||||||||||    
T  36183442 ctctaattgtgtcattcctaatcctatcatgtctagtcttaccactcatccaacgcaacatcct 36183379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 180
Target Start/End: Complemental strand, 45077727 - 45077676
Alignment:
Q  129 catttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    ||||| ||||||||||  |||||||||||| |||||||||||||||||||||    
T  45077727 catttctaattctatctagtctagtcttaccacacatccaacgcaacatcct 45077676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 216
Target Start/End: Original strand, 41763332 - 41763435
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcctaatgtgcgctcc----actttattctcgtgttggtt 212  Q
    |||||||| |||||||  |||| ||||| ||||||||||||| || |||||| ||||||||||| || | |||| |    |||||| |||||||||||||    
T  41763332 ctctaatggtgtcattcctaatcctatcttgtctagtcttaccactcatccatcgcaacatcctcatctccgctacacttactttactctcgtgttggtt 41763431  T
Q  213 ctta 216  Q
    ||||    
T  41763432 ctta 41763435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 9647899 - 9647959
Alignment:
Q  120 taatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||| ||||| ||||  |||||  ||||||||||| |||||||||||||||||||||    
T  9647899 taatgttgacatttctaatcttatcacatctagtcttaccacacatccaacgcaacatcct 9647959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 41197519 - 41197582
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||| |||||||  |||| ||||||||||||||||||| || |||| | |||||||||||    
T  41197519 ctctaatggtgtcattcctaatcctatcatgtctagtcttaccactcatctagcgcaacatcct 41197582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 6238054 - 6238108
Alignment:
Q  126 tgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||  ||||||||||||||||||||||||  | |||||| |||||||||||    
T  6238054 tgtcattcctaattctatcatgtctagtcttaccgctcatccagcgcaacatcct 6238108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 17581455 - 17581397
Alignment:
Q  121 aatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcc 179  Q
    ||||||||||||| ||||  |||||| ||||||||||| |||||||||||  |||||||    
T  17581455 aatgttgtcatttttaatcttatcatatctagtcttaccacacatccaacaaaacatcc 17581397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 210
Target Start/End: Complemental strand, 12734692 - 12734599
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcctaatgtgcgctccactttattctcgtgttgg 210  Q
    |||||||| |||||||| |||| |||||  |||||||||||| || |||||| | ||||||||| || | | || ||||| |||||| ||||||    
T  12734692 ctctaatggtgtcatttctaatcctatcccgtctagtcttaccactcatccagcacaacatcctcatctccactacacttgattctcatgttgg 12734599  T

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Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 23997608 - 23997547
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatc 178  Q
    |||||||| |||||||  |||| | ||||||||||||||||| || |||||| |||||||||    
T  23997608 ctctaatggtgtcattcctaatccgatcatgtctagtcttaccactcatccagcgcaacatc 23997547  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 44411707 - 44411650
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaa 174  Q
    ||||||||||||||||| ||||  ||||   ||||||||||||||||||| |||||||    
T  44411707 ctctaatgttgtcatttgtaatcatatctcatctagtcttacaacacatcaaacgcaa 44411650  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 180
Target Start/End: Complemental strand, 38434984 - 38434879
Alignment:
Q  73 tttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgc 172  Q
    |||||| |||||||||||| ||| |||||||| ||  | | || ||||||||||||||||| ||||  | ||  ||||||| |||| || ||||||| ||    
T  38434984 tttccaccatcttttctactataggtgctacccca--attctctctctaatgttgtcatttctaatcttctctcgtctagttttaccacgcatccaatgc 38434887  T
Q  173 aacatcct 180  Q
    ||||||||    
T  38434886 aacatcct 38434879  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 41858806 - 41858746
Alignment:
Q  31 ctacatgtcttccctctagttgcccacaccatctaagtccattttccatcatcttttctac 91  Q
    |||||||||||| |||||  || ||| |||||||||| ||| |||||| ||||||||||||    
T  41858806 ctacatgtcttctctctacatgtccaaaccatctaagcccagtttccaccatcttttctac 41858746  T

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Target: scaffold0036 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 4563 - 4626
Alignment:
Q  117 ctctaatgttgtcatttataattctatcatgtctagtcttacaacacatccaacgcaacatcct 180  Q
    |||||||| ||||||||||||| ||||||||||||||||||| |  ||||||||||||||||||    
T  4563 ctctaatggtgtcatttataatcctatcatgtctagtcttaccattcatccaacgcaacatcct 4626  T

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Target: scaffold0157 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 183
Target Start/End: Original strand, 25683 - 25802
Alignment:
Q  62 tctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtcttacaac 161  Q
    |||||| | |||||| | || ||||||||| ||| |||||||| |  |||| || |||||||| |||||||  |||| ||||||||||||||||||| ||    
T  25683 tctaagcctattttctaccaacttttctactataggtgctacccc--cactctctctctaatggtgtcattcctaatcctatcatgtctagtcttaccac 25780  T
Q  162 acatccaacgcaacatcctaat 183  Q
     |||||||| ||||||||||||    
T  25781 tcatccaacacaacatcctaat 25802  T

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Target: scaffold0024 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 60 - 180
Target Start/End: Complemental strand, 82767 - 82649
Alignment:
Q  60 catctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtctagtcttaca 159  Q
    |||||||| |||||||| | || ||||||||| ||| |||||||| |  |||| || |||||||| |||||||  |||| |||||||||||||||||||     
T  82767 catctaagcccattttctaccaacttttctactataggtgctacccc--cactctctctctaatggtgtcattcttaatcctatcatgtctagtcttact 82670  T
Q  160 acacatccaacgcaacatcct 180  Q
    || ||||||  ||||||||||    
T  82669 actcatccagtgcaacatcct 82649  T

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Target: scaffold0113 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 180
Target Start/End: Original strand, 11823 - 11952
Alignment:
Q  51 tgcccacaccatctaagtccattttccatcatcttttctacgataagtgctacctcaacactgtcgctctaatgttgtcatttataattctatcatgtct 150  Q
    |||||| | |||||||| | |||||| | || ||||||||| ||| |||||||| | ||  | || |||| ||| |||||||  |||| |||| ||||||    
T  11823 tgcccaaatcatctaagcctattttctaccaacttttctactataggtgctacccccactatctctctctgatggtgtcattcctaatcctattatgtct 11922  T
Q  151 agtcttacaacacatccaacgcaacatcct 180  Q
    ||||||||  | |||||| |||||||||||    
T  11923 agtcttaccgctcatccagcgcaacatcct 11952  T

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