View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_52 (Length: 280)
Name: NF17574_low_52
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 5663785 - 5663523
Alignment:
| Q |
1 |
gaatactttgaagcagaaaagaaatgcagaagaagagtttgaaaaaacaaacaattaacagtatatagaagcagctctattgaaaattgactgcattgat |
100 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||| |
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| T |
5663785 |
gaatactttgaagcagaaaagaaatgaaaaagaagagtttgaaaaaacaaacaattaaaaatatacagaagcagctctattgaaaattgactgcattgat |
5663686 |
T |
|
| Q |
101 |
aaaaaatcacaacaacagtagcataaaaacaattagaaataaatcaagtacaatagaataaacctattttggattctactcaatgccaaacatacaaatt |
200 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||| || ||||| |
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| T |
5663685 |
aaaaaatgacaacaacagtagcataaaaaccattagaaataaatcaaggacaatagaataaacctgtttttgattctactcaatgccaaacgtaaaaatt |
5663586 |
T |
|
| Q |
201 |
ttaagtctagcaaactccaacgtcctttcatcgccaccagtagtaatagcagaccaatccact |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5663585 |
ttaagtctagcaaactccaacgtcctttcatcgccacccgtagtaatagcagaccaatccact |
5663523 |
T |
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